Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4161 152 1e-31 seq3009 141 2e-28 seq2912 118 3e-21 seq4812 109 1e-18 seq1880 91.5 4e-13 seq4162 89.7 1e-12 seq6156 84.2 5e-11 >seq4161 Length=9822 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || |||||||| || || || || |||| ||||| || || || Sbjct 9544 ACGCAGACGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCACTCAGCGT 9603 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| | || || ||||| ||||| || || Sbjct 9604 GCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATGCC 9663 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||||||||| || ||||| | ||| || | |||||||| | Sbjct 9664 TTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCCAG 9723 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||||||| ||||| || || | ||| | ||||| Sbjct 9724 CGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 9765 >seq3009 Length=30629 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| || | || ||| Sbjct 11903 ACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGT 11962 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||| ||||| || || Sbjct 11963 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCC 12022 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || || || ||||| ||| || ||| |||| || | |||||||| | Sbjct 12023 CTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAG 12082 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATG 225719 |||||| ||||||||||| | || || | ||| | |||||||| || Sbjct 12083 CGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTTCTG 12130 >seq2912 Length=37157 Score = 118 bits (130), Expect = 3e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || ||||| ||||| || || ||| Sbjct 4541 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATTCCCTCC 4600 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||||| ||| || ||| |||| || | |||||||| | |||| Sbjct 4601 TTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCGAGCGTG 4660 Query 225676 ATCGTCTTGCCCGTCAAAGTTTT 225698 || |||||||||||||| || || Sbjct 4661 ATGGTCTTGCCCGTCAAGGTCTT 4683 >seq4812 Length=10756 Score = 109 bits (120), Expect = 1e-18 Identities = 162/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 193524 GCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCCGCTTGAGCGACGAGAAT-GTGATG 193582 ||||| ||||||| |||||||||| ||| ||| |||||| | || || | || Sbjct 4713 GCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGATAGCGAA- 4655 Query 193583 CCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTTCCTTCCCTCTCGTACTTTTCGTA 193642 ||| || | ||||| || | |||| | | || ||||||| ||||||||||||| || Sbjct 4654 CCACAGCTGCTGAGCGTTGATTGTCTTACGCGCACGTCCTTCCTTCTCGTACTTTTCATA 4595 Query 193643 CAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGACCGGGAGCTTCCTTTGGGCAAAA 193702 ||| | ||||| || | || || |||| ||||| |||||||| || || || || Sbjct 4594 CAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGGGACAGAA 4535 Query 193703 GAGACTCCAATCTCCATCACTTTCCACCCTCTTCATGAAGAGGTCAG 193749 | |||||| | |||| ||||| |||||||||||||| |||| Sbjct 4534 CAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAG 4488 >seq1880 Length=23057 Score = 91.5 bits (100), Expect = 4e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 225592 TGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTG 225651 || ||||| |||||||| ||||||||||| || ||||| |||||||| ||||| | | Sbjct 1 TGCTGGTCAGGCGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAG 60 Query 225652 TCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGC 225711 || || | |||||||| | || || |||||||| ||||| || || | ||| | ||| Sbjct 61 TCCGACGGCTCCACGTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGC 120 Query 225712 ATTTT 225716 || || Sbjct 121 ATCTT 125 >seq4162 Length=62052 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 225610 CCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCT 225669 ||||||||||| |||||||||||||| || ||||| | ||| || | |||||||| Sbjct 1 CCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCC 60 Query 225670 AACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 | ||||||||||||||| ||||| || || | ||| | ||||| || Sbjct 61 AGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCATCTT 107 >seq6156 Length=1942 Score = 84.2 bits (92), Expect = 5e-11 Identities = 111/149 (74%), Gaps = 5/149 (3%) Strand=Plus/Minus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| ||||| ||| ||||||||||||| ||||| || || | | Sbjct 430 AGAGTTGGTAAGGTTCTGCGCGTTTTATTGAATTAAACCACATGCTCCAACGATTGTGTA 371 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTA-GTACTCAGGTGGA-ATAT 7848 | || |||||| || |||| | ||| || |||||| | || | ||||| ||| | | Sbjct 370 AACTCCCGTCAATTCCTTTAAATTTCAATCTTGCGATTATACTTTTTCAGGCGGAGAGCT 311 Query 7849 TTACGCGTTAGCTTAATTA-ATATAAAAA 7876 | | ||||||||| |||| || |||||| Sbjct 310 TAATGCGTTAGCT--ATTATATCTAAAAA 284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192427438232954