Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq4161 185 2e-41 seq3009 165 2e-35 seq2912 149 1e-30 seq4740 123 5e-23 seq2898 114 3e-20 seq6276 102 2e-16 seq4162 95.1 3e-14 seq3280 89.7 1e-12 >seq4161 Length=9822 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || ||||| || | ||| || || ||||||||||||||| Sbjct 9539 CCGCCACGCAGACGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCACTC 9598 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || || || ||||||||||| || |||||| ||| Sbjct 9599 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 9658 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| ||||||||| || ||| | ||||| | |||||||| || || Sbjct 9659 ATGCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 9718 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 9719 TCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 9765 >seq3009 Length=30629 Score = 165 bits (182), Expect = 2e-35 Identities = 178/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || ||||| || | || || || |||||||||||||| | Sbjct 11897 ACCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 11956 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 11957 CAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 12016 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || ||||||||||| || || || ||| || || | || || ||||||| | || | Sbjct 12017 GATTCCCTCCTTGTCCTGAATTTTCTGC-TTGACATTGTCAATGCTGTCCGACGGCTCCA 12075 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 | ||||| ||||| ||||| ||||| | ||||| ||||| |||||||||||| Sbjct 12076 CGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTTC 12128 >seq2912 Length=37157 Score = 149 bits (164), Expect = 1e-30 Identities = 148/189 (78%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||||||||||| ||||| || || || ||||| |||||| Sbjct 4511 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 4570 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | || || |||||| ||| || ||||||||||| ||||| || ||| || || | || Sbjct 4571 AGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGC-TTGACATTGTC 4629 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||||| | || || ||||| ||||| ||||| |||||||| ||||| || || Sbjct 4630 AATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACAAA 4689 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 4690 GATCTGCAT 4698 >seq4740 Length=106065 Score = 123 bits (136), Expect = 5e-23 Identities = 602/939 (64%), Gaps = 33/939 (4%) Strand=Plus/Plus Query 229536 TTCCCTATTCAATACCCCGACCTCTGGGATATGTATAAGAAGGCGGTGGCAACCTTTTGG 229595 ||||| ||||| | | ||| | ||| | ||||| ||||| || | ||| |||| ||| Sbjct 15956 TTCCCCATTCAGGAACACGAAGTGTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTCTGG 16015 Query 229596 ACCACGGAGGAAGTCCCCCTAAATGCA-GACGTCGTCGACTGGCGCGAGAAACTCAACGA 229654 || | ||||| || ||| |||| ||| || |||||| || || |||| || Sbjct 16016 ACGGCTGAGGAGCTCGACCTTG-TGCACGACCTCAAGGACTGGAGCAAG---CTCACGGA 16071 Query 229655 CGATGAACGCCATTTCATCAAGCACATTCTCGGGTTTTTTGCAGGTTCCGACGGTATCGT 229714 | | || || || |||||||||||| | |||| || || |||| ||||||||||| Sbjct 16072 CAACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGTGACGGTATCGT 16131 Query 229715 GATGGAAAACTTGCAGACTAACTTCAGCGTCGAAGTAACGGTCCCAGAGGCACGGCAGTT 229774 || || |||||| | ||||||||| |||||| ||| || ||||| || || Sbjct 16132 GAACGAGAACTTGGCCATGAACTTCAGCAACGAAGTGCAGGTGCCCGAGGCTCGTTGCTT 16191 Query 229775 TTACGCATACCAGACGTTCAATGAATCTGTTCATTCGGAACAGTATGCCCTTCTTATTGA 229834 || | | ||||| || ||| |||| ||||| || | || || ||||| Sbjct 16192 CTATGGCTTCCAGATCGCCATTGAGAACATTCACTCGGAGGTCTACTCACTGCTCATTGA 16251 Query 229835 CGCGCTCATTTCCGACGAGCGAGAGCGTGCCGAACTGTTCGACGCCATCGAAAACATCCC 229894 | || ||| |||| | ||| | | | || | ||||| || | |||||| Sbjct 16252 CACGTACATCAAGGACGCGATCGAGAAGGACCATCTCCTGCGTGCCATTGAGACCATCCC 16311 Query 229895 GGCGGTCCATAACAAAGCGCGTTGGGCTCAGAAGTGGCTGGAACCCAGTAAA---TCGTT 229951 ||| || || || | ||||| | |||||| || || || | || | Sbjct 16312 TTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGACCCGCGTGTATCCTCCTA 16371 Query 229952 TGCAGAGCGTCTCGTCGCGTGGGTGTGC-GTTGAGGGTATTCTGTTCTCCGGGAGTTTCT 230010 | ||||| || | || | | ||| || || || || | ||||| || ||||| Sbjct 16372 CCCGGAGCGCCTGCTGGCTTTCG-CTGCTGTGGAAGGCATCTTCTTCTCGGGCTCTTTCT 16430 Query 230011 GCGCCATCTTTTGGCTACGCAACAAG---GGCGTCATGCCCGGGCTCGGTCTGTCGAACG 230067 || |||||||||||||| || ||| ||| |||||||||| || | | ||||||| Sbjct 16431 GCTCCATCTTTTGGCTA---AAGAAGCGCGGCCTCATGCCCGGTCTGAGCTTCTCGAACG 16487 Query 230068 AATTCATCAGCAGGGACGAAGGTCTTCACCAGCAATTTGGCGAGGTCTTGTATTCGAAGC 230127 | ||||||| | ||||| || | ||| | | || | | | ||||| || |||| Sbjct 16488 AGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCCTGCCTTTTGTACTCCAAGC 16547 Query 230128 TAAATAACAAACTACCTTTCGA-AACGGTG-AAAC-AAATCGTCACAGAAGTAGTTGCAA 230184 | | ||| || || || | | ||| | || | ||| | || | || | | Sbjct 16548 TGGTCACCAAGCTGCC---GGAGAGCCGTGTACACGAGATCATTCGTGACGCTGTGGTGA 16604 Query 230185 ATGAAAAGGAGTTCATTTGCGACGCTATTCCT-TGCCGTCTTATCGGCATGAATGCTGAT 230243 ||| | ||||| | | ||| | | ||| || | || || || ||||| ||| Sbjct 16605 TTGAGCACGAGTTTGTGCGTGACTCGCTCCCTGTGGAG-CTGATTGGTATGAACTCTGCC 16663 Query 230244 CTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGG---GTAC 230300 |||||| | || || || || ||||| ||||| ||| | || |||| || || | Sbjct 16664 CTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCTCTACTCGCTTGGTGTGTCC 16723 Query 230301 GAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGG 230360 ||| | || || | |||||||| || | | ||||| | || || ||||| || Sbjct 16724 AAGA---TCTACCACGCTAAGAACCCTTTTGACTGGATGGACATGATCTCTCTCCAAGGC 16780 Query 230361 AAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTA-TCAAAGGCC--CGGTGTATTAAAA 230417 || || ||||| ||||| |||||||| |||| || || |||||| || || | Sbjct 16781 AAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTACTCCAAGGCCGGCGTTGGTGTCGCC 16840 Query 230418 CCTGAGGATAATGTTTTCGCTATGGACGGTGACTTTTAA 230456 ||||||| | |||||| || |||| | ||||||||| Sbjct 16841 GCTGAGGAGCAGGTTTTCACTCTGGATGCGGACTTTTAA 16879 >seq2898 Length=40630 Score = 114 bits (126), Expect = 3e-20 Identities = 293/443 (66%), Gaps = 10/443 (2%) Strand=Plus/Plus Query 273620 AGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGAC 273679 ||||||||| || || || || | |||||||| || | |||| ||||| || || Sbjct 13927 AGACCAACCCGTACCGATTCCTTCCGCCCCATTCACAAGCAACATCGGAATAATAGGCAC 13986 Query 273680 ATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATC 273739 || || | ||||||| |||||||||| ||| |||| || || || Sbjct 13987 GTAGTACACTGGCTCAACAGGGAAGCCATCGTCGTCGGCGTAGCGTAACAGCGCGTCGTC 14046 Query 273740 CGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGCACT 273799 || ||| ||| || || || | |||| |||||| || || | | ||| Sbjct 14047 TTCTTCGGGGAATACCAAGCGAGTGTGCTTCTGCAGTAACGTGAAGATATATCGAGGACT 14106 Query 273800 CGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCT-CGGG--CAGTAGC-- 273854 ||| |||||| ||||||||||| | | |||||| ||||| |||| ||||||| Sbjct 14107 AGCAGCGTCCTTACCACCTTGCAGTCGAGTACCAAATTGACCTGACGGGTACAGTAGCGG 14166 Query 273855 CAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGG 273914 ||| |||| || || ||| | ||||| ||||| || || || ||| || | Sbjct 14167 CAGGTTAT-----TGGACCCCACGAAGTCCTGCGCCATGTTGACAATCGTCGAGTGTAAC 14221 Query 273915 GATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACC 273974 || | || |||||||||||||| |||| || | |||||| | |||||| ||| Sbjct 14222 GAGGCTTCTCCGTGGTGATAGGCTGTGTGCTCACTGCAGTAACCAGCCAGCTGAGCCACC 14281 Query 273975 TTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAGGGC 274034 ||||| || ||||| | || || || || | ||| ||||||||||||||| Sbjct 14282 TTCACTTCACTCGTAAGCTTGCGTTTTAAACAAGCGAACAGAACCTTCCGCTGCGAGATT 14341 Query 274035 TTGAACCCATCAACGACCGATGG 274057 |||| ||||| || |||||||| Sbjct 14342 TTGAGACCATCGACCACCGATGG 14364 >seq6276 Length=26186 Score = 102 bits (112), Expect = 2e-16 Identities = 254/383 (66%), Gaps = 6/383 (2%) Strand=Plus/Plus Query 273597 GGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACC 273656 |||||||| | ||||| | |||||||| || || |||||| | || ||||| Sbjct 13656 GGGTTGTAGTTGGGAACTGAGCTGGACCAACCCGTTCCGATACCGTCACTGCCGTTCACG 13715 Query 273657 AGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATCACCATCGTCGTAA 273716 || | | ||||||||||||| || |||| ||||| || | || || || | Sbjct 13716 AGCACCATGGGGATAATTGGGATGTACCATTCCGGCTCGATGGACTGGCCGTCTTCATTC 13775 Query 273717 AGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGT 273776 || ||||||| || | | ||| | | || | | || || | | | || Sbjct 13776 AGATACTTCAGACAATCGTTGTCCAAAGGATCGTAGATACGGCGAGTAAGCTGCTCTAGG 13835 Query 273777 TTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAAC 273836 || |||||||| || | ||||| || ||| || ||||| ||| | || ||| ||| Sbjct 13836 TTGGTGAAAATATAACGAGCACTGGCCGAGTCTTTACCACCCATCAGACGCGTACCGAAC 13895 Query 273837 TGACCC-TCGGG--CAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATA 273893 ||||| ||||| |||||| || ||||||||||| || ||| | ||||| |||||| Sbjct 13896 TGACCAATCGGGGACAGTAG---GTGGATGTTGTTGCTGCCAACGAAGTCCTGCGCCATA 13952 Query 273894 TTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATA 273953 ||||||||| ||||| || | ||| ||||| || ||||| ||| || | | Sbjct 13953 TTCACGATACAGCCCTGCAGACTTTGCTCACCGTGATGGTAGGCAGAGTGCTCAGACACG 14012 Query 273954 TAACCACTGAACTGAGCAACCTT 273976 || ||| ||||| || ||||| Sbjct 14013 TAGCCAGCCAACTGTGCCACCTT 14035 >seq4162 Length=62052 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 || |||||||| ||||||||| || ||| | ||||| | |||||||| || || || Sbjct 1 CCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCC 60 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || ||||||||||| || ||||| ||||| ||||| |||||||| || Sbjct 61 AGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCATCTT 107 >seq3280 Length=26141 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| ||||| || ||||||| ||||||||||| |||| ||| ||||| Sbjct 16024 TCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTACTGGTTGGCAGTCTCATCAAGG 15965 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||| |||||||| ||||||||||| || ||||| || | |||||| || ||| Sbjct 15964 TGCGACTCAATGTGGTGAAAAGCGTGCTGAGCGACGTAGGCGAAACGCATGGAAGGGTGC 15905 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||| | || | |||| | || || |||| || || || ||| Sbjct 15904 TTCCACACCTGACCACTGGTCGGCTCCACTTCACCCGTCAGCATCTTGATCAGCGTAGAC 15845 Query 316342 TTTCCCGCGCCGTTTTCACCCACGACACCGAT 316373 || || || ||||| |||| ||| |||| Sbjct 15844 TTACCGGCACCGTTGGGTCCCAGCACAGCGAT 15813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046648123549314