Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3009 158 1e-33 seq2912 141 9e-29 seq4161 138 1e-27 >seq3009 Length=30629 Score = 158 bits (174), Expect = 1e-33 Identities = 177/234 (76%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || ||||| | |||||| ||||| || ||||||||| ||||| ||||| Sbjct 11895 CCACCACCACGCAGACGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCC 11954 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || || ||||| |||| |||||||||||||||||||| ||||| ||||| ||||| | Sbjct 11955 GACAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGC 12014 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTC 41811 || | | |||||||||| ||||| ||||| || | || | |||| || ||| Sbjct 12015 GGGATTCCCTCCTTGTCCTGAATTTTCTGCTT-GACATTGTCAATGCTGTCCGACGGCTC 12073 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| || | ||| || || || ||||| || ||||| |||||||||||||| || Sbjct 12074 CACGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCATTTT 12127 >seq2912 Length=37157 Score = 141 bits (156), Expect = 9e-29 Identities = 148/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| ||||| ||||| |||| |||||||||||||||||||| | Sbjct 4509 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 4568 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||||||||| ||||| | || | | |||||||||| |||||| ||||| || | Sbjct 4569 TCAGGCGCTGCTGGTCAGGCGGGATTCCCTCCTTGTCCTGGATTTTCTGCTT-GACATTG 4627 Query 41793 ACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 || | |||| || |||||| || | ||| || || || ||||||| ||||| || Sbjct 4628 TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAAGGTCTTCACA 4687 Query 41852 AAAATCTGCATG 41863 || ||||||||| Sbjct 4688 AAGATCTGCATG 4699 >seq4161 Length=9822 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||||| || ||||| ||||||||| ||||| ||||| Sbjct 9539 CCGCCACGCAGACGCAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCACTC 9598 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||| ||||| |||| ||||| ||||| | || Sbjct 9599 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 9658 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| |||||||| ||| | | | | ||| | |||||| Sbjct 9659 ATGCCTTCCTTGTCCTGGATCTTTTGCTT-GACGTTGTCGATCGAGTCCGAAGGCTCCAC 9717 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||| ||||| || || |||| ||||| ||||| |||||||| Sbjct 9718 GTCCAGCGTGATCGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 9765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462264756169200