Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq30005 127 4e-24 seq23663 107 4e-18 seq18512 107 4e-18 seq8249 107 4e-18 seq4095 107 4e-18 seq16124 105 1e-17 seq33704 104 5e-17 seq1946 104 5e-17 seq31089 98.7 2e-15 seq4570 98.7 2e-15 >seq30005 Length=11534 Score = 127 bits (140), Expect = 4e-24 Identities = 445/689 (65%), Gaps = 17/689 (2%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| ||||| || ||||||| ||||| |||||||||| ||| ||| || Sbjct 1127 CTCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCCAG 1186 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||| |||||||||||||| ||||| || |||||||| | |||||| || || Sbjct 1187 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCGACGTAAGCGAAACGCATGGAAGGGTG 1246 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 ||||||||| || |||| |||| | ||||| |||| ||| || || || Sbjct 1247 CTTCCAAACCTGGCCAGACGTGGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGA 1306 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCATT 319229 || || |||||||| ||| | ||| |||| | | ||| | | || Sbjct 1307 CTTGCCGGCACCGTTGGGGCCGAGCACGGCGATACGGCTCGACAGAGCGCACGTCACAGA 1366 Query 319230 CACGTTGTCAAAGATT---AGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-A 319285 | ||||| |||| | || ||| || || |||| | | | || || | Sbjct 1367 GATGTTGT---TGATTGACGGCTTGGGCGTGCCAGGGTACTGGTA-CGAGCAGTTTGTCA 1422 Query 319286 GCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACT 319345 | ||||||| | |||| |||| | | ||||| || ||||| |||||| Sbjct 1423 GACGAATGATGGGCTTGCCCTTGTTCTTGATGTCGGCAAGGAAACCAGGCTCCGGGAACG 1482 Query 319346 TCCACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCT 319402 | || | | | | || |||| || ||||||| | | ||||| || || Sbjct 1483 TGAACTTGACGTTGTCCGACTCG---AGTTCGTAGTAGGCCTTCGCCTCGGGCTTCTGCT 1539 Query 319403 TCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGA 319462 ||||| | ||||| || |||||||| |||| ||||| || | ||||| |||| Sbjct 1540 CTACGAAAGCAGACAGGTTGCCCTTGTAGATCTTGAGCTTGCGG---GTCTCGTAGTGGA 1596 Query 319463 TAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAA 319522 | || ||| || | ||| ||||| || |||||||| ||||| || | ||| | Sbjct 1597 TGATGTTGGTACAGCACGTGTCCAGGAAGCCAGAGTCGTGGGACACCATGATCGACGTCA 1656 Query 319523 CGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGT 319582 ||| | ||| | ||||||| | || |||| ||||| |||| | |||| Sbjct 1657 CGTTGGTGAGGCTCGTCAGGTAGTTCTCCAGCCACGCGACGTTGTGCACATCCAAGTGGT 1716 Query 319583 TGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGA 319642 | || ||||| ||||| ||||| | | || ||| | ||||| ||||| || || | | Sbjct 1717 TCGTGGGCTCATCAAGCAGCAGGATGTCGGCCTTCTGCAGCATGGCACGGGCCAGCTCCA 1776 Query 319643 GTTTCATTTTCCACCCTCCGGAAAGAGTG 319671 ||||||| ||||| || || ||||| ||| Sbjct 1777 GTTTCATCTTCCAACCACCCGAAAGCGTG 1805 Score = 93.3 bits (102), Expect = 9e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 319857 GGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCC 319916 |||||| || || ||||||||||| || ||||||||||| || || || || || Sbjct 1985 GGGGAAGCCCTCGAGCTGGCCGTTGGAGATGGCGCGCATCAGCGTCGACTTGCCACATCC 2044 Query 319917 GTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAG 319976 ||| || || ||||||||||| |||| || || || ||| | || | ||||||||| Sbjct 2045 GTTGGGGCCGCACAGACCGTAACGGTGGCCACGCTTGAGGCGAAGACGGGCGTTGTTCAG 2104 Query 319977 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACA 320012 ||||| | ||||| || || || || || ||||| Sbjct 2105 CAGAATCATACCACCGTAGGCGAGCGAGAACTCACA 2140 >seq23663 Length=12105 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 106 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 165 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 166 CCCACGGTGGGC 177 >seq18512 Length=515 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 490 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 431 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 430 CCCACGGTGGGC 419 >seq8249 Length=822 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 769 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 710 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 709 CCCACGGTGGGC 698 Score = 105 bits (116), Expect = 1e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||| || |||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 216 GCCCGTCTAGCTCMGTTGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 157 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 156 CCCACGGTGGGC 145 >seq4095 Length=204 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 78 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 19 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 18 CCCACGGTGGGC 7 >seq16124 Length=2717 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| ||||| ||||| | |||||||||||||||||| Sbjct 832 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGACTCTTAATTTTGTGGTCGTGGGTTCGAGC 891 Query 165770 CCCACGATGGGCA 165782 |||||| |||||| Sbjct 892 CCCACGGTGGGCA 904 >seq33704 Length=6393 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || ||||||| |||||||||||||||||| Sbjct 2184 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGTCTCTTAATCTTGTGGTCGTGGGTTCGAGC 2243 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2244 CCCACGGTGGGC 2255 >seq1946 Length=229 Score = 104 bits (114), Expect = 5e-17 Identities = 65/70 (93%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 165712 CCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCC 165771 |||||||||||||| |||||||||| ||||| ||||||| |||||||||||||||||||| Sbjct 229 CCGTCTAGCTCAGTTGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCC 170 Query 165772 CACGATGGGC 165781 |||| ||||| Sbjct 169 CACGGTGGGC 160 >seq31089 Length=16610 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| ||||| ||||||| | |||||||||||||||| Sbjct 14850 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGACTCTTAATCTTGGGGTCGTGGGTTCGAGC 14909 Query 165770 CCCACGATGGGC 165781 |||| | ||||| Sbjct 14910 CCCATGGTGGGC 14921 >seq4570 Length=201 Score = 98.7 bits (108), Expect = 2e-15 Identities = 62/67 (93%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 165715 TCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCAC 165774 ||||||||||| |||||||||| ||||| ||||||| ||||||||||||||||||||||| Sbjct 201 TCTAGCTCAGTTGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGCCCCAC 142 Query 165775 GATGGGC 165781 | ||||| Sbjct 141 GGTGGGC 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057323501152640