Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq32329 132 5e-26 seq27878 132 5e-26 seq27877 132 5e-26 seq26115 132 5e-26 >seq32329 Length=12294 Score = 132 bits (146), Expect = 5e-26 Identities = 298/443 (67%), Gaps = 10/443 (2%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| ||| || ||||| || || | |||||||| | |||||| || ||||| || | Sbjct 11451 ACAGCAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGA 11392 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | ||| ||||||||| || || ||||| | ||| || |||| | |||||| || | Sbjct 11391 AGCTCAGACCGGGCATCAGCCCGCGCTTCTTCAGCCAGAAGATCGAGCAGAACGAGCCCG 11332 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCG---CGT 17132 | ||||| || ||||| || | || ||||| | | || || | ||| | || || Sbjct 11331 AGAAGAAGATGCCCTCCACAGCGGCGAACGCCAGCAGGCGCTCCGGGTAAGACGACACGC 11272 Query 17133 CTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTT 17192 || || | ||| || || |||||| ||| || | | | | ||| ||||| | Sbjct 11271 GCGGGT--CGCA-CCACTTGAGCGCCCACTGGGCCTTCTTCGTCACGCACGGGATCGTCT 11215 Query 17193 CTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTA 17252 | ||||| | | | || || || ||| | || ||||| |||||||| | Sbjct 11214 CGATGGCGCGCAGCAGGTGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCGATGAGCA 11155 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 | ||||| || ||||| |||||||| ||||| ||||| || ||||| ||||| |||| Sbjct 11154 GCGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAAGCAGCGGG 11095 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGTTCACGATGCC 17370 | || | | || || || ||| |||| || || || |||||||| ||||| Sbjct 11094 CCTCGGGCACCTGCACCTCGTTACTGAA--GTTCATGGCCAGGTTCTCGTTCACAATGCC 11037 Query 17371 GTCGCTCGCGGCGAAAAACGCCA 17393 |||||| || ||||| ||||||| Sbjct 11036 GTCGCTGGCCGCGAAGAACGCCA 11014 >seq27878 Length=10574 Score = 132 bits (146), Expect = 5e-26 Identities = 298/443 (67%), Gaps = 10/443 (2%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| ||| || ||||| || || | |||||||| | |||||| || ||||| || | Sbjct 844 ACAGCAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGA 903 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | ||| ||||||||| || || ||||| | ||| || |||| | |||||| || | Sbjct 904 AGCTCAGACCGGGCATCAGCCCGCGCTTCTTCAGCCAGAAGATCGAGCAGAACGAGCCCG 963 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCG---CGT 17132 | ||||| || ||||| || | || ||||| | | || || | ||| | || || Sbjct 964 AGAAGAAGATGCCCTCCACAGCGGCGAACGCCAGCAGGCGCTCCGGGTAAGACGACACGC 1023 Query 17133 CTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTT 17192 || || | ||| || || |||||| ||| || | | | | ||| ||||| | Sbjct 1024 GCGGGT--CGCA-CCACTTGAGCGCCCACTGGGCCTTCTTCGTCACGCACGGGATCGTCT 1080 Query 17193 CTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTA 17252 | ||||| | | | || || || ||| | || ||||| |||||||| | Sbjct 1081 CGATGGCGCGCAGCAGGTGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCGATGAGCA 1140 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 | ||||| || ||||| |||||||| ||||| ||||| || ||||| ||||| |||| Sbjct 1141 GCGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAAGCAGCGGG 1200 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGTTCACGATGCC 17370 | || | | || || || ||| |||| || || || |||||||| ||||| Sbjct 1201 CCTCGGGCACCTGCACCTCGTTACTGAA--GTTCATGGCCAGGTTCTCGTTCACAATGCC 1258 Query 17371 GTCGCTCGCGGCGAAAAACGCCA 17393 |||||| || ||||| ||||||| Sbjct 1259 GTCGCTGGCCGCGAAGAACGCCA 1281 >seq27877 Length=1900 Score = 132 bits (146), Expect = 5e-26 Identities = 298/443 (67%), Gaps = 10/443 (2%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| ||| || ||||| || || | |||||||| | |||||| || ||||| || | Sbjct 844 ACAGCAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGA 903 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | ||| ||||||||| || || ||||| | ||| || |||| | |||||| || | Sbjct 904 AGCTCAGACCGGGCATCAGCCCGCGCTTCTTCAGCCAGAAGATCGAGCAGAACGAGCCCG 963 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCG---CGT 17132 | ||||| || ||||| || | || ||||| | | || || | ||| | || || Sbjct 964 AGAAGAAGATGCCCTCCACAGCGGCGAACGCCAGCAGGCGCTCCGGGTAAGACGACACGC 1023 Query 17133 CTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTT 17192 || || | ||| || || |||||| ||| || | | | | ||| ||||| | Sbjct 1024 GCGGGT--CGCA-CCACTTGAGCGCCCACTGGGCCTTCTTCGTCACGCACGGGATCGTCT 1080 Query 17193 CTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTA 17252 | ||||| | | | || || || ||| | || ||||| |||||||| | Sbjct 1081 CGATGGCGCGCAGCAGGTGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCGATGAGCA 1140 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 | ||||| || ||||| |||||||| ||||| ||||| || ||||| ||||| |||| Sbjct 1141 GCGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAAGCAGCGGG 1200 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGTTCACGATGCC 17370 | || | | || || || ||| |||| || || || |||||||| ||||| Sbjct 1201 CCTCGGGCACCTGCACCTCGTTACTGAA--GTTCATGGCCAGGTTCTCGTTCACAATGCC 1258 Query 17371 GTCGCTCGCGGCGAAAAACGCCA 17393 |||||| || ||||| ||||||| Sbjct 1259 GTCGCTGGCCGCGAAGAACGCCA 1281 >seq26115 Length=10575 Score = 132 bits (146), Expect = 5e-26 Identities = 298/443 (67%), Gaps = 10/443 (2%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| ||| || ||||| || || | |||||||| | |||||| || ||||| || | Sbjct 9732 ACAGCAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGA 9673 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | ||| ||||||||| || || ||||| | ||| || |||| | |||||| || | Sbjct 9672 AGCTCAGACCGGGCATCAGCCCGCGCTTCTTCAGCCAGAAGATCGAGCAGAACGAGCCCG 9613 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCG---CGT 17132 | ||||| || ||||| || | || ||||| | | || || | ||| | || || Sbjct 9612 AGAAGAAGATGCCCTCCACAGCGGCGAACGCCAGCAGGCGCTCCGGGTAAGACGACACGC 9553 Query 17133 CTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTT 17192 || || | ||| || || |||||| ||| || | | | | ||| ||||| | Sbjct 9552 GCGGGT--CGCA-CCACTTGAGCGCCCACTGGGCCTTCTTCGTCACGCACGGGATCGTCT 9496 Query 17193 CTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTA 17252 | ||||| | | | || || || ||| | || ||||| |||||||| | Sbjct 9495 CGATGGCGCGCAGCAGGTGGTCCTTCTCGATCGCGTCCTTGATGTACGTGTCGATGAGCA 9436 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 | ||||| || ||||| |||||||| ||||| ||||| || ||||| ||||| |||| Sbjct 9435 GCGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAACCCGTAGAAGCAGCGGG 9376 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGTTCACGATGCC 17370 | || | | || || || ||| |||| || || || |||||||| ||||| Sbjct 9375 CCTCGGGCACCTGCACCTCGTTACTGAA--GTTCATGGCCAGGTTCTCGTTCACAATGCC 9318 Query 17371 GTCGCTCGCGGCGAAAAACGCCA 17393 |||||| || ||||| ||||||| Sbjct 9317 GTCGCTGGCCGCGAAGAACGCCA 9295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517306700951040