Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq36228 82.4 6e-11 >seq36228 Length=63081 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| || || || || |||| ||| || || || || || || |||| || | || Sbjct 48348 ATGGCGCTGCCGCCGTGCCACATGTTCTGCCAATTCTATGTGGCCGACGGGGAGCTGTCG 48407 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 ||||| | |||||| | |||| || ||||| || || || || ||||||||||| | Sbjct 48408 TGCCAGATGTACCAGCGGTCGGCCGACATGGGGCTCGGAGTGCCCTTCAACATTGCCAGC 48467 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATT 19151 || ||||| ||||| | |||||||| || ||| | || | |||||||| ||| Sbjct 48468 TACGCACTGCTTACGCGGCTGGTAGCGCAGGTGGTCGGATTGAAGCCGGGAGATTTCATT 48527 Query 19152 CATACAATGGGGGATGCACATATTTACTTGAATCA 19186 || || || || || || | ||| |||| || Sbjct 48528 CACGTTATCGGCGACGCGCACGTGTACCTGAACCA 48562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399324199229760