Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq36228 266 4e-66 seq27802 82.4 9e-11 >seq36228 Length=63081 Score = 266 bits (294), Expect = 4e-66 Identities = 414/587 (71%), Gaps = 4/587 (1%) Strand=Plus/Minus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || |||||||||||||| ||||| ||||||||||| || | ||||| ||||| || || Sbjct 48574 AGCGGCTCCACGTGGTTCAGGTACACGTGCGCGTCGCCGATAACGTGAATGAAATCTCCC 48515 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTG 145803 |||| | || | || || |||| || ||||| | ||||||||| |||||| Sbjct 48514 GGCTTCAATCCGACCACCTGCGCTACCAGCCGCGTAAGCAGTGCGTAGCTGGCAATGTTG 48455 Query 145804 AAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCG 145863 |||||||| || ||||||||||| |||| |||||||||| |||||| || ||||||||| Sbjct 48454 AAGGGCACTCCGAGCCCCATGTCGGCCGACCGCTGGTACATCTGGCACGACAGCTCCCCG 48395 Query 145864 CCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCC 145923 | ||||| ||||| ||||| | | |||||| |||||||| ||||| || || || Sbjct 48394 TCGGCCACATAGAATTGGCAGAACATGTGGCACGGCGGCAGCGCCATCTCGCTTAGATCG 48335 Query 145924 GCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCT 145983 ||||||||||| || | || || | | | | | ||||| | | || Sbjct 48334 GCCGGGTTCCACGCCGACAGCACAATGCGGCGGTCCGTCGGGTTGGTTCGAAGCTTGTGG 48275 Query 145984 ATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACGTA 146042 |||| || |||||||||||||||||| || ||| || | | || | |||| ||| Sbjct 48274 ATCACCTCAGCGAGCTGGTCCACGCCCTGGCCGGTGTAGTCCG-CGTGCATGTCCTTGTA 48216 Query 146043 CGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCT 146102 | ||| || ||||| | ||||||||| ||||| || || || || || || || | Sbjct 48215 CTTGGCGCCAAAGTGGCGCCACTGGAAGCCGTATACCGGTCCAAGATCGCCCACTTCGCG 48156 Query 146103 GTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGAC 146162 | |||||| | | || | ||||| || || ||| ||||||| || | || Sbjct 48155 CGACTGCAGCCCTCGAGTGTCCAGATACTCCCGAGATCCATTGCCGTCCCAAATGTGGAT 48096 Query 146163 GCCCCTC-GCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTT 146221 | || || || | ||| | || | |||| || ||||||||||| |||||||| | Sbjct 48095 GTCCTTCTGCTG-CAGCGTGTGGGCGCTCGTGTCGCCGCTGATGAACCACAGCAGCTCCT 48037 Query 146222 CGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAAC 146268 || || || | |||||||||||||||||| ||||||| |||||| Sbjct 48036 CGGCCACACCGCGCCAGAAGACCCTCTTGGTCGTCAGCARCGGGAAC 47990 >seq27802 Length=835 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 146144 TGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGA 146203 || ||||||| || | || | ||||| | ||| | || | |||| | || |||| Sbjct 539 TGCCGTCCCAAATGTGGATGTCCCTCTGCTACAGCGTGTGGGCGCTCGTGTAGCCGCTGA 480 Query 146204 TGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGG 146263 ||||||| |||||||| ||| || || | |||||||||||||||||| ||||||| | Sbjct 479 TGAACCACAGCAGCTCCTCGGCCACACCGCGCCAGAAGACCCTCTTGGTCGTCAGCAACG 420 Query 146264 GGAAC 146268 ||||| Sbjct 419 GGAAC 415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589804420549120