Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq32285 149 5e-31 seq30472 129 5e-25 seq35386 100 2e-16 seq12976 100 2e-16 seq36271 91.5 1e-13 >seq32285 Length=18199 Score = 149 bits (164), Expect = 5e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | ||||||||| || || |||||||| ||||||| |||||| || Sbjct 8364 CAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGCCCGTC 8423 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || || ||| |||| ||||||||||| || || || |||||||||||||| Sbjct 8424 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 8483 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | ||||| || || || | |||| | ||||| ||| || || | || | ||| Sbjct 8484 TTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACATCTAGCGTGATCGT 8543 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 ||||| |||| ||| || || || |||||||||| Sbjct 8544 CTTGCCCGTCAAAGTCTTCACGAAGATCTGCATGG 8578 Score = 122 bits (134), Expect = 8e-23 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | ||||||||| || || |||||||| ||||||| ||||| ||| Sbjct 7680 CAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATC 7739 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || || ||| |||| ||||||||||| || || || |||||||||||||| Sbjct 7740 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 7799 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG 118680 | ||||| || || || | |||| | ||||| Sbjct 7800 TTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCG 7834 >seq30472 Length=20972 Score = 129 bits (142), Expect = 5e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | || ||||| || || |||||||| ||||| | || || || Sbjct 11781 CAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTTAGCGTACGACCGTC 11840 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || || ||| |||| ||||||||||| || || || ||||| |||||||| Sbjct 11841 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCTTCCTTGTC 11900 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | ||||| || || || | |||| | ||||| ||| || |||| || | ||| Sbjct 11901 TTGGATTTTCTGCTTGACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATCGT 11960 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| || || || || ||||||||| Sbjct 11961 CTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 11994 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || ||||||||| | || ||||| || || |||||||| ||||| Sbjct 11995 CCACCGCGCAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTT 12054 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || ||||| ||||| || || ||| |||| ||||||||||| || || || Sbjct 12055 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 12114 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || ||||||||| ||||| || || || | |||| | ||||| ||| || Sbjct 12115 ATTCCTTCCTTGTCTTGGATTTTCTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 12174 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | || | ||| ||||| ||||| || || || |||||||||||| Sbjct 12175 TCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAAATCTGCATG 12222 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || ||||||||| | || ||||| || || |||||||| |||||| Sbjct 12223 CCACCGCGCAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTC 12282 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || ||||| ||||| || || ||| | || ||||||||||| || || || Sbjct 12283 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGCGGG 12342 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| ||||| ||| ||||| || || || | |||| | ||||| ||| || Sbjct 12343 ATGCCTTCCTTATCTTGGATTTTCTGCTTGACATTATCGATCGAGTCCGAAGGCTCCACG 12402 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || | ||| ||||| ||||| || || || || |||||||| Sbjct 12403 TCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 12449 >seq35386 Length=12911 Score = 100 bits (110), Expect = 2e-16 Identities = 152/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACT---CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 ||||| | ||| ||| |||| | || || |||||||| || | ||||| Sbjct 4772 AACACATACTGGTTTGAAGACGTACCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCG 4713 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||||||||| || || ||| |||| || |||||||| || || || ||||| |||||| Sbjct 4712 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 4653 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || ||||| || || || | || | | |||||| ||| || |||| || | Sbjct 4652 TCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACATCGAGCGTGATG 4593 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || ||||| ||||| ||||| ||||||||| Sbjct 4592 GTCTTTCCCGTCAGGGTTTTCACAAAGATCTGCATG 4557 >seq12976 Length=6227 Score = 100 bits (110), Expect = 2e-16 Identities = 152/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACT---CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 ||||| | ||| ||| |||| | || || |||||||| || | ||||| Sbjct 3715 AACACATACTGGTTTGAAGACGTACCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCG 3656 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||||||||| || || ||| |||| || |||||||| || || || ||||| |||||| Sbjct 3655 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 3596 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || ||||| || || || | || | | |||||| ||| || |||| || | Sbjct 3595 TCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACATCGAGCGTGATG 3536 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || ||||| ||||| ||||| ||||||||| Sbjct 3535 GTCTTTCCCGTCAGGGTTTTCACAAAGATCTGCATG 3500 >seq36271 Length=16985 Score = 91.5 bits (100), Expect = 1e-13 Identities = 196/293 (67%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 133077 TTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTC 133136 ||||||||||| |||||||| | | ||||| | | || || | | ||| Sbjct 1296 TTGATCTCCCACACCGTCTTGTACTTGTCCTTGATTTTGTCCGGAATGATCTTGACCTTC 1355 Query 133137 TGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGA 133196 ||||| || ||| ||| || |||| |||||||| ||||| || | ||| | || Sbjct 1356 TGCACCGAGCCGCCATCGTTCAGGATCTGGTTGCGCACCTCCGGGGTCCAGATGCCCAGC 1415 Query 133197 TCGATTAGCGCTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGT 133256 || || ||| | | | || |||| ||| || | |||||||| || || ||||| Sbjct 1416 TCAATCAGCTCCCTCATCAGGTACTTGTTCACAATGGTGAACTCGCCCGCAAGCACGCGG 1475 Query 133257 CTGAGATATACATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCC 133316 | | || | || |||||| |||| |||| || |||||||| || || || || ||| Sbjct 1476 CGGTTGTACATGTTGGACGTGTACGGCTCGATGGACTCGTTGTTACCCAGGATTTGAGCC 1535 Query 133317 GTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTT 133369 |||| ||||| ||||| ||| || | || ||||| | | ||||| ||| Sbjct 1536 GTCGAGGCCGTCGGCATCGGCGCGACGAGCAGCGAGTTGCGGATGCCGTGCTT 1588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433635150290176