Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq32285 132 6e-26 seq30472 131 2e-25 seq35386 122 1e-22 seq12976 122 1e-22 seq31321 84.2 2e-11 >seq32285 Length=18199 Score = 132 bits (146), Expect = 6e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| |||| ||| |||||| || || ||||| || ||| || ||| | Sbjct 8361 ACGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGCCC 8420 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || ||||| || || ||||||||||| | ||| | || |||||| Sbjct 8421 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 8480 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| |||||| || || | ||| | | | || ||| || |||||||| | ||||| Sbjct 8481 GTCTTGGATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACATCTAGCGTGA 8539 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || |||||||| | ||||| || ||||| ||||| Sbjct 8540 TCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 8576 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| |||| ||| |||||| || || ||||| || ||| || || | Sbjct 7677 ACGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 7736 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| || || ||||||||||| | ||| | || |||||| Sbjct 7737 ATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 7796 Query 43088 GTCCATGATTTTTTGTTT 43105 ||| |||||| || || Sbjct 7797 GTCTTGGATTTTCTGCTT 7814 >seq30472 Length=20972 Score = 131 bits (144), Expect = 2e-25 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||| ||||| || |||||| || || ||||| || ||| || || | Sbjct 12234 ACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGACC 12293 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || ||||| || || ||||||||||| | ||| | || ||||| Sbjct 12294 GTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTT 12353 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 || |||||| || |||| | | | || ||| | ||||| |||| |||||| Sbjct 12354 ATCTTGGATTTTCTGCTTGACATTATCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGAT 12413 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 || |||||||| |||||||| || ||||| ||||| ||| Sbjct 12414 CGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATCTTT 12453 Score = 123 bits (136), Expect = 3e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||| ||||| || |||||| || || ||||| || || || || | Sbjct 11778 ACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTTAGCGTACGACC 11837 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || ||||| || || ||||||||||| | || | || ||||| Sbjct 11838 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCTTCCTT 11897 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| |||||| || |||| | | | || ||| | ||||| |||| |||||| Sbjct 11898 GTCTTGGATTTTCTGCTTGACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGAT 11957 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||||||| |||||||| || ||||| ||||| Sbjct 11958 CGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 11993 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||| ||||| || |||||| || || ||||| || || || || | Sbjct 12006 ACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTTAGCGTACGACC 12065 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || ||||| || || ||||||||||| | ||| | | ||||| Sbjct 12066 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCTTCCTT 12125 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| |||||| || |||| ||| | | | || ||| | ||||| || | ||||| Sbjct 12126 GTCTTGGATTTTCTGCTTGA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCAAGCGTGA 12184 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || |||||||| |||||||| || || || ||||| Sbjct 12185 TCGTCTTGCCCGTCAGCGTCTTCACGAAAATCTGCAT 12221 >seq35386 Length=12911 Score = 122 bits (134), Expect = 1e-22 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 4747 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 4688 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | || ||||||||||| | ||| | || ||||||||| |||||| || |||| | | | Sbjct 4687 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 4629 Query 43114 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 || | |||| || |||||||||| ||||||||| || ||||| || || || ||| Sbjct 4628 TCAATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACA 4569 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 4568 AAGATCTGCAT 4558 >seq12976 Length=6227 Score = 122 bits (134), Expect = 1e-22 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 3690 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 3631 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | || ||||||||||| | ||| | || ||||||||| |||||| || |||| | | | Sbjct 3630 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 3572 Query 43114 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 || | |||| || |||||||||| ||||||||| || ||||| || || || ||| Sbjct 3571 TCAATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACA 3512 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 3511 AAGATCTGCAT 3501 >seq31321 Length=5119 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 |||||| |||||| |||| ||||||||||||||||| ||||| |||||||||||| |||| Sbjct 5049 GGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGATATACTAACCACTATACTAACGAG 4990 Query 60136 GATT 60139 ||| Sbjct 4989 AATT 4986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571553648995840