Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq32285 147 1e-30 seq30472 145 5e-30 seq35386 118 7e-22 seq12976 118 7e-22 >seq32285 Length=18199 Score = 147 bits (162), Expect = 1e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | |||||||||||| | ||| || ||||| |||||||||||| | Sbjct 8350 CCGCCACGCAGACGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 8409 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| || |||| |||| ||||||||| ||||| || || ||||||||||| | |||| Sbjct 8410 AGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 8469 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| || || ||||| | | | | ||||| || | || || || Sbjct 8470 -ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 8528 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||| || ||||| || | ||| ||||| ||||||||||| Sbjct 8529 ATCTAGCGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 8576 Score = 107 bits (118), Expect = 1e-18 Identities = 126/168 (75%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | |||||||||||| | ||| || ||||| |||||||||||| | Sbjct 7666 CCGCCACGCAGACGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 7725 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| ||| | || |||| ||||||||| ||||| || || ||||||||||| | |||| Sbjct 7726 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 7785 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATC 34329 | || ||||||||| || || ||||| | | | | ||||| || Sbjct 7786 -ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTC 7832 >seq30472 Length=20972 Score = 145 bits (160), Expect = 5e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||||| ||| || || || ||||| |||||||||||| | Sbjct 12223 CCACCGCGCAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTC 12282 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| ||| |||| |||| ||||||||| |||||||| || ||||||||||| | |||| Sbjct 12283 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGCGGG 12342 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || || || ||||| | || | ||||| || | | || || Sbjct 12343 -ATGCCTTCCTTATCTTGGATTTTCTGCTTGACATTATCGATCGAGTCCGAAGGCTCCAC 12401 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||| | |||||| || ||||| || || || ||||| |||||||||||| Sbjct 12402 GTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATC 12450 Score = 138 bits (152), Expect = 7e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34161 ATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG 34220 ||||||| || || | |||||||| ||| || || || ||||| |||||||||||| Sbjct 11765 ATCCGCCACGAAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGC 11824 Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 ||| ||| |||| |||| ||||||||| ||||| || || ||||||||||| | Sbjct 11825 TTAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGTG 11884 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || |||||||| || || ||||| | || | | ||||| || | | || | Sbjct 11885 GGATGCCTTCCTTGTCTTGGATTTTCTGCTTGACATTGTCGATCGAGTCCGAAGGCTCCA 11944 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| | |||||| || ||||| || || || ||||| ||||||||||| Sbjct 11945 CGTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 11993 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||||| ||| || || || ||||| |||||||||||| Sbjct 11995 CCACCGCGCAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTT 12054 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| ||| |||| |||| ||||||||| ||||| || || ||||||||||| | |||| Sbjct 12055 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 12114 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| || || ||||| | | | | ||||| || | | || || Sbjct 12115 -ATTCCTTCCTTGTCTTGGATTTTCTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCAC 12173 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| | |||||| || ||||| || || || ||||| || |||||||| Sbjct 12174 GTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAAATCTGCAT 12221 >seq35386 Length=12911 Score = 118 bits (130), Expect = 7e-22 Identities = 141/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||| || ||| ||| |||| || | ||||||||| ||||| || Sbjct 4745 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 4686 Query 34262 AGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGC 34320 || ||||||||||| | |||| | || |||||||| || || ||||| | || | | Sbjct 4685 AGGCGCTGCTGGTCAGGCGGG-ATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTC 4627 Query 34321 TATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 || || | || || || || | ||||||||| || || || || ||||||||||| Sbjct 4626 AATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACAAA 4567 Query 34381 GATCTGCAT 34389 ||||||||| Sbjct 4566 GATCTGCAT 4558 >seq12976 Length=6227 Score = 118 bits (130), Expect = 7e-22 Identities = 141/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||| || ||| ||| |||| || | ||||||||| ||||| || Sbjct 3688 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 3629 Query 34262 AGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGC 34320 || ||||||||||| | |||| | || |||||||| || || ||||| | || | | Sbjct 3628 AGGCGCTGCTGGTCAGGCGGG-ATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTC 3570 Query 34321 TATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 || || | || || || || | ||||||||| || || || || ||||||||||| Sbjct 3569 AATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACAAA 3510 Query 34381 GATCTGCAT 34389 ||||||||| Sbjct 3509 GATCTGCAT 3501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322926598215680