Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq36271 201 2e-46 seq34568 132 1e-25 seq32329 100 6e-16 seq27878 100 6e-16 seq27877 100 6e-16 seq26115 100 6e-16 seq27659 86.0 1e-11 seq26781 86.0 1e-11 >seq36271 Length=16985 Score = 201 bits (222), Expect = 2e-46 Identities = 1076/1701 (63%), Gaps = 71/1701 (4%) Strand=Plus/Minus Query 248419 ATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGCG 248478 |||| | | | |||||| ||||||||| || |||| |||||||| ||| ||||| Sbjct 3358 ATGTTCGTGATCAAGCGCGACGGGCGCCGCGAGGACGTCAAGTTCGACAAGATCACGGCG 3299 Query 248479 CGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGAT--CATGTGGCCATCG 248536 ||||||| |||||||| || || || | || ||| || ||| ||| | ||| Sbjct 3298 CGCATCACCAAGCTCTGCTACGGACTCAACCCGGACTATGTGGATGCCATCAAG--ATCT 3241 Query 248537 CCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAG 248596 | ||||| || | | ||||| ||| |||| ||||| || | || |||||| | | Sbjct 3240 CGCAGAAGGTCGTGGCCGGCGTGTACCCCGGTGTAACCACCTCGGAGCTGGACGAGCTGG 3181 Query 248597 CTGCGGAGACGGCGGCGTACATGGCGATTGCA-CACCCCGACTACTCGCTGCTGGCCGGG 248655 | || |||||||| || ||| | | ||| ||||| |||| ||| |||||| | | Sbjct 3180 CCGCTGAGACGGCTGCCTACCAGAGCAC-GCAGCACCCGGACTTCTCCAAGCTGGCGGCG 3122 Query 248656 AGGATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTTCGTCGAAACCATGGCT 248715 | |||||||| || | || ||||| | ||||| || ||| ||| | ||| | Sbjct 3121 CGTATCGCCGTGTCCAACCTGCACAAGAACACGAACAAGGTCTTCAGCGACAACATCGAG 3062 Query 248716 GACCTACA------------------------TGCCTATGGGATGGTC---GCCGATGAC 248748 | | | || |||| | | | || ||||| ||| Sbjct 3061 GTCTTCCACAAGAACGTGCACGAGAAGACAGGTGCCGCGGCGCCGCTCATTGCCGACGAC 3002 Query 248749 GT---CCACACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGC 248805 || | ||| |||||| ||| |||| | | ||| || || || | ||| | Sbjct 3001 GTGTACGACATCGTCATGCAGCACAAGGACGAGCTCA---ACTCGGCCATCATCCACGAC 2945 Query 248806 AAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAA 248865 || || |||||||| | ||| | ||||| ||||| ||| | || ||| || Sbjct 2944 CGGGACTTCGAGTACGACTACTTCGGCTTCAAGACGCTCGAGCGAGGCTACCTCTTCCGC 2885 Query 248866 ATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATT 248925 | | || ||| ||||||| || ||||| ||| | ||||| ||||| | || || Sbjct 2884 GTCAACGGGAAGGTCGTGGAGCGCCCGCAGCAGATGATCATGCGCGTGGCGCTGGGCATC 2825 Query 248926 CACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATG 248985 |||||| ||| | ||| || || |||||||| ||| | | | Sbjct 2824 CACAAGACGGACGTTGAGGCCGCTCTGCAGACGTACGAGCTCATGTCGCAGATGTTTTTC 2765 Query 248986 ACACATGCCACACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAGCTGAGCTC 249041 || || || || || ||||| ||||||||||| || |||| |||||| || Sbjct 2764 ACGCACGCGACGCCCACGCTGTTCAACGCCGGCACGCCGCGTCC----TCAGCTCTCGTC 2709 Query 249042 GTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACA 249101 ||||| || || |||||||| |||||||| | || |||||||| ||||| || || || Sbjct 2708 CTGCTTCCTCCTGGCCATGCAGGACGACTCGATTGAGGGCATTTACGACACACTGAAGCA 2649 Query 249102 GACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGC 249161 | ||| || || || | |||||||| || || || | ||| ||||| || Sbjct 2648 GTGTGCGTGTATCTCCAAGTGGGCGGGCGGGATTGGCATCAGTATGCACAATATCCGTGC 2589 Query 249162 GAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCG 249221 || | ||||| || || ||||| | | || ||| | ||| | || || Sbjct 2588 GACGAACAGCTACATTCGCGGCACGAATGGCTCCTCCAACGGCATCATCCCCATGCTGCG 2529 Query 249222 ATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTT 249278 ||| | ||| || | | | | |||||| ||| || || ||||| ||||| Sbjct 2528 TGTGTTTAACGACACGGCACGATACGTGGACCAGGGCGGCGGCAAGCGCAAGGGATCGTT 2469 Query 249279 CGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAA 249338 |||||| || |||| ||||||||||| | || |||||||||||| || ||||| Sbjct 2468 CGCCATCTACCTGGAGCCCTGGCACGCCGACGTGTTCGAGTTCCTGGACCTGCGGAAGAA 2409 Query 249339 CAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTT 249398 | ||||||||||||| | ||||| ||||| ||||||| || ||||| | || | Sbjct 2408 CCACGGCAACGAGCTGCACCGCGCGCGCGACCTGTTCTACGCGCTCTGGGTGCCGGATCT 2349 Query 249399 GTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTT-TCTCCGTCCGACGCCC 249457 |||||| |||||| | || |||||| | |||| || |||| | || ||| || | Sbjct 2348 CTTCATGAAGCGCGTCGAAGCAGACGGCCAGTGGA-GCCTCTTCTGCCCCAACGAGGCGC 2290 Query 249458 CGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATAAGAAA--TACGAATC 249515 | | ||| ||| |||| ||| ||||| ||| || |||| ||||| Sbjct 2289 CCGGGCTCTACGAGTGCTGGGGCGACGAGTTCGA--GGCCCTGTACGAAAAGTACGAGAA 2232 Query 249516 CAACGGCATCG---GCAAGACAATCAAGGCTCGGACCCTTT--TTGCGAAGGTGGTGGAG 249570 | || || ||||||| ||||| || | | || | || | | |||| Sbjct 2231 GGAGGGACGCGCTCGCAAGACGATCAAAGCGCAGCAGCTGTGGTTCTCCA--TCCTGGAC 2174 Query 249571 TCCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAG 249629 ||||||| ||||| || | ||||| | || ||||||| ||| || |||| |||| Sbjct 2173 GCCCAGATTGAGACGGGCGTGCCGT-TCATGCTGTTCAAGGACTCGGCCAACCGCAAGTC 2115 Query 249630 TAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGC--AGAGGTGATTCAA 249687 ||||| | | | || || || ||||||||| || || ||||| ||||| || | Sbjct 2114 GAACCAGCAGAACCTGGGCACGATCCGCTCGAGCAA-CT-TGTGCTGTGAGGTCATGGAG 2057 Query 249688 TACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGCAAGCATCAATCTCGTGAGGCAC 249747 |||||||| || ||| | ||||| ||||||||||| | | || | | | Sbjct 2056 TACTCGTCGCCTGACGAGGTGGCCGTGTGCAACCTGGCGTCCGTGGCGCTGCCCAAGTTC 1997 Query 249748 GTGAGGGCGGACAGGACGTTCGACTTCGAGCGTCTTCACCGGACGGCGAAACAGGCGATC 249807 ||| | || | | |||| ||| | | || || | | |||| || || | Sbjct 1996 GTGGAAGAGGGCGGCGTGTTCAACTACCACAAGCTGTACGAGGTGACGAAGGTGGTGACC 1937 Query 249808 AAAAACCTCAACAAGGTGATTGATGTCAATTTTTACCCCCTTGAGGAATGCAGGTTGTCC 249867 ||||| |||||||| ||||| ||||| | |||||| | | ||| | |||| Sbjct 1936 CGCAACCTGAACAAGGTCATTGACGTCAACTACTACCCCGTGGCGGAGGCGCGCACGTCC 1877 Query 249868 AACATGAAGCACCGTCCATGTGGGCTGGGCGTTCAGGCACTGCACGACGTCTACATGGTG 249927 |||||| ||||| || || | |||||||||| || ||||| | ||| | Sbjct 1876 AACATGCGCCACCGCCCCGTCGGTATCGGCGTTCAGGGTCTCGCCGACGCGTTCATCCTC 1817 Query 249928 ATGGGATTCCCCTTCGAG-TCAGAGGAGGCAGCGACGCTAAATAAACAGATTTTCGAGAC 249986 |||| | | | |||||| | || | |||| ||| || || |||| || ||||| Sbjct 1816 ATGGACTACGCGTTCGAGAGCCCGCAAGCCCGCGA-GCTCAACAAGAAGATCTTTGAGAC 1758 Query 249987 CATCTATCACGGGAGCGTCGAGGCGTCCATCGAAAGGGCCAAGATCGACGGACCATACGA 250046 ||| || ||| | | ||| |||| || || | |||||| || || ||||| Sbjct 1757 CATTTACTACGCTTCCATGGAGACGTCGATGGAGATCGCCAAGGAGCTGGGCCCGTACGA 1698 Query 250047 GAGTTTTCAGGGGTCGCCCGC 250067 || || ||||| || || || Sbjct 1697 GACGTTCCAGGGCTCTCCTGC 1677 >seq34568 Length=17029 Score = 132 bits (146), Expect = 1e-25 Identities = 267/390 (68%), Gaps = 12/390 (3%) Strand=Plus/Plus Query 253994 TGGCGACCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCAT 254053 |||| | || || |||||||| ||| | || || || || |||||||||||||| ||||| Sbjct 6062 TGGCCAGCTGCCCCATTTGCTGTTCTATGGACCCCCAGGGACAGGCAAGACGTCCACCAT 6121 Query 254054 CCTGGCGCTGGCCCGAACCCTGTTGGGCGAGGGGAAC---ATGAGAGAGCGCGTGCTCGA 254110 | ||||| | | ||| || || ||| || | | || | ||| | | || Sbjct 6122 CGTGGCGGTCGGCCGCCAGCTCTTCGGCCCGGACTTCCGCAAGAACGGCCGCTTCTTGGA 6181 Query 254111 GCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTC 254170 ||| || || || ||||| || || | | || || ||||| ||| |||||| ||| | Sbjct 6182 GCTCAATGCGTCGGACGACCGAGGCATCAAGGTGGTGCGCGAGAAGGTCAAGAGCTTCGC 6241 Query 254171 CAAGATGTCGATTT-CGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGG 254229 || | || | || |||| |||| ||||| |||||| | | | |||| Sbjct 6242 ACAGGGCGCCATCAGCACCG--CCAAT--GGCTTGCCGCCCTTCAAGATTATCGTGCTGG 6297 Query 254230 ACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGC 254289 ||||||| ||| ||||||||| ||| |||||||| || || ||||| | |||||||| Sbjct 6298 ACGAGGCCGACTCCATGACGGGCGATGCGCAGTCGGCGCTTCGCCGCATGATGGAGAACT 6357 Query 254290 ACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCC 254347 ||||| || ||||| || ||||| | || |||||||| |||| ||||| | || Sbjct 6358 ACTCCAAGGTCACGCGCTTCTGCCTCATCTGTAACTACGTGAGTCG--CATCATTGAGCC 6415 Query 254348 GCTGGCTTCTCGGTGCGCCAAGTTTCGATT 254377 |||| || || || ||||| || || || Sbjct 6416 AGTGGCCTCGCGATGTGCCAAATTCCGCTT 6445 >seq32329 Length=12294 Score = 100 bits (110), Expect = 6e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| |||| | ||||| || || |||||||| ||||| || || ||||||||||| Sbjct 11729 GTACTCGCCCACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGCGAGATCATGTCCAT 11670 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||| | |||||| | |||| |||| | || |||| Sbjct 11669 CCAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACGCCCAACGAGTACAGCAGACG 11610 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 |||||||||||||| |||||||| |||| | || | | || ||||| ||| | || Sbjct 11609 GTCCGCCACAAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATCAGCTCCAC 11550 Query 157438 GGGAAGCG 157445 || |||| Sbjct 11549 CGGCAGCG 11542 >seq27878 Length=10574 Score = 100 bits (110), Expect = 6e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| |||| | ||||| || || |||||||| ||||| || || ||||||||||| Sbjct 566 GTACTCGCCCACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGCGAGATCATGTCCAT 625 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||| | |||||| | |||| |||| | || |||| Sbjct 626 CCAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACGCCCAACGAGTACAGCAGACG 685 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 |||||||||||||| |||||||| |||| | || | | || ||||| ||| | || Sbjct 686 GTCCGCCACAAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATCAGCTCCAC 745 Query 157438 GGGAAGCG 157445 || |||| Sbjct 746 CGGCAGCG 753 >seq27877 Length=1900 Score = 100 bits (110), Expect = 6e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| |||| | ||||| || || |||||||| ||||| || || ||||||||||| Sbjct 566 GTACTCGCCCACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGCGAGATCATGTCCAT 625 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||| | |||||| | |||| |||| | || |||| Sbjct 626 CCAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACGCCCAACGAGTACAGCAGACG 685 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 |||||||||||||| |||||||| |||| | || | | || ||||| ||| | || Sbjct 686 GTCCGCCACAAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATCAGCTCCAC 745 Query 157438 GGGAAGCG 157445 || |||| Sbjct 746 CGGCAGCG 753 >seq26115 Length=10575 Score = 100 bits (110), Expect = 6e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| |||| | ||||| || || |||||||| ||||| || || ||||||||||| Sbjct 10010 GTACTCGCCCACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGCGAGATCATGTCCAT 9951 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||| | |||||| | |||| |||| | || |||| Sbjct 9950 CCAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACGCCCAACGAGTACAGCAGACG 9891 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 |||||||||||||| |||||||| |||| | || | | || ||||| ||| | || Sbjct 9890 GTCCGCCACAAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATCAGCTCCAC 9831 Query 157438 GGGAAGCG 157445 || |||| Sbjct 9830 CGGCAGCG 9823 >seq27659 Length=17048 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 254212 TCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCC 254271 |||||||| | |||||||||||||||||| ||||||| ||||||||||| | | || | Sbjct 11785 TCAAGCTCATCATCCTGGACGAGGCGGACTCCATGACCAACGACGCGCAGTTCTCTCTGC 11726 Query 254272 GCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGT 254331 |||| || || | | | || |||| |||||||| | |||||||||||| Sbjct 11725 GCCGCGTCATCGAAAAGTATACCAAGAACGCGCGCTTTTGCCTCATCTGCAACTACGTGA 11666 Query 254332 CGAAGATCATCGCCCCGCTG 254351 ||||||||| | ||||| Sbjct 11665 GCAAGATCATCCCGGCGCTG 11646 >seq26781 Length=17018 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 254212 TCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCC 254271 |||||||| | |||||||||||||||||| ||||||| ||||||||||| | | || | Sbjct 5234 TCAAGCTCATCATCCTGGACGAGGCGGACTCCATGACCAACGACGCGCAGTTCTCTCTGC 5293 Query 254272 GCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGT 254331 |||| || || | | | || |||| |||||||| | |||||||||||| Sbjct 5294 GCCGCGTCATCGAAAAGTATACCAAGAACGCGCGCTTTTGCCTCATCTGCAACTACGTGA 5353 Query 254332 CGAAGATCATCGCCCCGCTG 254351 ||||||||| | ||||| Sbjct 5354 GCAAGATCATCCCGGCGCTG 5373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073258358165504