Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq36228 114 3e-20 >seq36228 Length=63081 Score = 114 bits (126), Expect = 3e-20 Identities = 446/689 (65%), Gaps = 12/689 (2%) Strand=Plus/Plus Query 35159 ACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGAC 35218 || || ||||| || || || || || || | || ||| ||||| ||| | ||| || Sbjct 47928 ACAGGCACAGGCACGCTGTCGATCTTCGGCGCGCAGATGCGGTTCAGTCTCAGGGACAAC 47987 Query 35219 ACTATTCCAGTT-CTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTC 35277 | |||| | | || || ||||||| | |||||| | || || | || || || Sbjct 47988 G-TGTTCCCGYTGCTGACGACCAAGAGGGTCTTCTGGCGCGGTGTGGCCGAGGAGCTGCT 48046 Query 35278 GTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATACACATCTG 35337 |||||||||||| ||| | || |||| | || ||||| | || ||||| || Sbjct 48047 GTGGTTCATCAGCGGCGACACGAGCGCCCACACGCTGCAGCAGAAGGACATCCACATTTG 48106 Query 35338 GAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGG 35397 | ||| ||||| || ||||| | | |||||| | ||||| | | | | || ||| Sbjct 48107 GGACGGCAATGGATCTCGGGAGTATCTGGACACTCGAGGGCTGCAGTCGCGCGAAGTGGG 48166 Query 35398 AGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGA-TACCT 35456 ||| | ||||| |||||||| ||||| ||||| || ||||| || | || | || | Sbjct 48167 CGATCTTGGACCGGTATACGGCTTCCAGTGGCGCCACTTTGGCGCCAAGTACAAGGACAT 48226 Query 35457 GTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGA 35516 | | | || || || || |||| | || || | || | | | | | || Sbjct 48227 GCAC-GCGGACTACACCGGCCAGGGCGTGGACCAGCTCGCTGAGGTGATCCACAAGCTTC 48285 Query 35517 GAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 || || || || | | || | || |||| ||||| || ||||| | Sbjct 48286 GAACCAACCCGACGGACCGCCGCATTGTGCTGTCGGCGTGGAACCCGGCCGATCTAAGCG 48345 Query 35577 TTATGGCTCTTCCTCCATGCCACATG-ACTGCTCAATTTTATGTGGCTAATGGAGAATTG 35635 ||||| || || || ||||||||| |||| ||||| |||||||| | || || || Sbjct 48346 AGATGGCGCTGCCGCCGTGCCACATGTTCTGC-CAATTCTATGTGGCCGACGGGGAGCTG 48404 Query 35636 TCGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTG 35693 ||||||||| |||| ||||| || || ||| ||| | || ||||||||||| |||| Sbjct 48405 TCGTGCCAGATGTACCAGCGGTCGGCCGACATG--GGGCTCGGAGTGCCCTTCAACATTG 48462 Query 35694 CATCATACTCTCTTCTGACTCATCTGATGGC-CAGTATGGTGGGTCTAAAACCGGGAGAG 35752 | ||| | || || || | ||| | || ||| |||| || | || |||||||| Sbjct 48463 CCAGCTACGCACTGCTTACGCGGCTGGTAGCGCAG-GTGGTCGGATTGAAGCCGGGAGAT 48521 Query 35753 TTTATCCTCACTCTTGGTGACGCACACATTTATAATACCCACATTGAGGTGTTAAAGAAG 35812 || || | | | | || ||||| ||| | || | |||| | ||| | | ||||| Sbjct 48522 TTCATTCACGTTATCGGCGACGCGCACGTGTACCTGAACCACGTGGAGCCGCTTCAGAAG 48581 Query 35813 CAGTTGTGCCGCGTCCCTAGACCATTCCC 35841 ||| | | || ||| | |||||||| Sbjct 48582 CAGCTTTCGCGAACTCCTCGCCCATTCCC 48610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989115788226240