Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq36228 201 1e-46 >seq36228 Length=63081 Score = 201 bits (222), Expect = 1e-46 Identities = 413/605 (68%), Gaps = 15/605 (2%) Strand=Plus/Minus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 || || || |||||||| ||| ||||| ||||| || | ||| | || |||||| Sbjct 48574 AGCGGCTCCACGTGGTTCAGGTACACGTGCGCGTCGCCGATAACGTGAATGAAATCTCCC 48515 Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044 || ||| || || || || | ||| ||| || || ||||||||||| ||||| Sbjct 48514 GGCTTCAATCCGACCACCTGCGCTACCAGCCGCGTAAGCAGTGCGTAGCTGGCAATGTTG 48455 Query 21045 AACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC 21104 || || || ||||| ||||||||||| |||| |||||||| |||||| ||||||||||| Sbjct 48454 AAGGGCACTCCGAGCCCCATGTCGGCCGACCGCTGGTACATCTGGCACGACAGCTCCCCG 48395 Query 21105 CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCG-AGGTC 21163 ||||| || || || || || | ||| || || || || |||||| ||| || || Sbjct 48394 TCGGCCACATAGAATTGGCAGAACATGTGGCACGGCGGCAGCGCCATCT-CGCTTAGATC 48336 Query 21164 CGCGGGGTTCCACGCGCACATAACGATGCGCCGAT-CGTGGGGCCGCCTGTTAATTAGAT 21222 || ||||||||||| ||| || ||||| || | ||| ||| | | | | | | Sbjct 48335 GGCCGGGTTCCACGCCGACAGCACAATGCGGCGGTCCGTCGGGTTGGTTCGAAGCTTG-T 48277 Query 21223 CCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGT 21282 | ||| | | ||||||||||| ||||| || ||||| |||| || ||| Sbjct 48276 GGATCACCTCAGCGAGCTGGTCCACGCCCTGGCCGGTGTAGTCCGCGTGCATGTCCTTGT 48217 Query 21283 ACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCC---TCGC 21339 ||| || ||||| || | ||||||||| ||||| ||||| || ||||||||| |||| Sbjct 48216 ACTTGGCGCCAAAGTGGCGCCACTGGAAGCCGTATACCGGTCCAAGATCGCCCACTTCGC 48157 Query 21340 GGCGGTCCCCGAAGCCCT-GCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATT 21398 ||| | | |||||| | | ||| | | | || || || | |||||||||| Sbjct 48156 -GCG---ACTGCAGCCCTCGAGTGTCCAGATACTCCCGAGATCCATTGCCGTCCCAAATG 48101 Query 21399 TTTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAAC 21458 | | | | || ||| | || | ||| ||| ||||| |||||||||| | Sbjct 48100 TGGATGTCCTTCTGCTGCAGCGTGTGGGCGCTCGTGTCGCCGCTGATGAACCACAGCAGC 48041 Query 21459 TCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAAC---TCGTCC 21515 ||||| | || || | ||| || ||||| ||||| || | || || ||| | |||| Sbjct 48040 TCCTCGGCCACACCGCGCCAGAAGACCCTCTTGGTCGTCAGCARCGGGAACACGTTGTCC 47981 Query 21516 CTGAG 21520 ||||| Sbjct 47980 CTGAG 47976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427583475133440