Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_004681.1 Length=75931 Score E Sequences producing significant alignments: (Bits) Value seq36741 131 8e-26 >seq36741 Length=22457 Score = 131 bits (144), Expect = 8e-26 Identities = 328/496 (66%), Gaps = 17/496 (3%) Strand=Plus/Minus Query 66844 CATCGACGCTGAGCACTCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGA 66903 ||||||||| || || || | ||| | | ||||||||||| | ||||| ||| |||| Sbjct 15244 CATCGACGCGGAACATGCCATTGACGCTCACTACGCCAAGGCTTTGGGTGTCGACATCGA 15185 Query 66904 CAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCT 66963 | || || ||||||||| | ||||| | || |||||||||| || || Sbjct 15184 CGCGCTGTACGTCTCGCAGCCGGACTCAGGCGAAGAAGCTCTGGAGATCGCAGATACGCT 15125 Query 66964 CGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCG 67023 | || ||| || | | | | | || || | || |||||| || || ||||| || Sbjct 15124 CATCCGGTCGGGAGCGGTAGACCTTGTGGTGCTGGATAGTGTGGCTGCGCTTGTGCCACG 15065 Query 67024 CGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTC 67083 || ||||| || ||||| || || ||| || ||| ||||| ||||| |||||| Sbjct 15064 TGCAGAGCTTGAGGGCGAGATGGGAGACCAGCAGATCGCGCTGCAGGCGCGACTCATGAG 15005 Query 67084 GCAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTG 67140 ||||| | ||||||||||| ||| | | |||| | || ||| | | ||| Sbjct 15004 CCAGGCGCTTCGCAAGCTCACGGGCTCGCTGTCCAAGTCGAACTGCACCATTA---TCTT 14948 Query 67141 GGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGG----CCCGAATGAGACCA 67196 |||||||| | || ||||| | |||| | | || || |||||| | Sbjct 14947 CCTCAACCAGATCCGACAGAAGGTGGGCATCAT---CTTTGGATCTCCCGAA----GTTA 14895 Query 67197 CCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCG 67256 | ||||||| | ||| ||| | | |||||||||||| || |||| |||| |||| Sbjct 14894 CGTCGGGCGGCACGGCGTTGCGCTACTACGCCTCAGTGCGGCTGGACATCCGCCGCAAAA 14835 Query 67257 CCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGA 67316 | | ||||| ||||| | || ||||| || || ||| ||||| | ||||| Sbjct 14834 CGGCAATTAAGGAGGGCGACGTGGTCGTCGGTAATGAGACGACGGTCAAAGTTGCCAAGA 14775 Query 67317 ACAAGCTGGCCCCGCC 67332 ||||||||||| |||| Sbjct 14774 ACAAGCTGGCCTCGCC 14759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242745100948736