Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq30472 93.3 4e-14 seq35386 91.5 1e-13 seq12976 91.5 1e-13 >seq30472 Length=20972 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || || | || || |||||||||||||||| ||| || Sbjct 12258 CTCCTTCTGGATGTTGTAGTC-GCTCAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGA 12316 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 |||| | ||||||||| || ||| | | |||||| || ||||||||||||| | Sbjct 12317 AAATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTATCTTGGATTTTCTGCTTGACAT 12376 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | || | || | || |||| |||| || || || || || || || || |||| Sbjct 12377 TATCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCA 12436 Query 48714 CAAAAATCTGCATCGTGTCTTGA 48736 | || ||||||||| | ||||| Sbjct 12437 CGAAGATCTGCATCTTTGCTTGA 12459 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || || | || || |||||||||||||||| ||| || Sbjct 12030 CTCCTTCTGGATGTTGTAGTC-GCTTAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGA 12088 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--T 48651 | || | ||||||||| || ||| | | ||||||||| ||||||||||||| | Sbjct 12089 AGATCAGACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCTTGGATTTTCTGCTTGACGT 12148 Query 48652 AGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711 | || || | || | || |||| || | || || || || || || || || || Sbjct 12149 TGTCG--ATCGAGTCCGAAGGCTCCACGTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTT 12206 Query 48712 CACAAAAATCTGCAT 48726 ||| ||||||||||| Sbjct 12207 CACGAAAATCTGCAT 12221 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || || | || || |||||||||||||||| ||| || Sbjct 11802 CTCCTTCTGGATGTTGTAGTC-GCTTAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGA 11860 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | ||||||||| || || | | ||||||||| ||||||||||||| | Sbjct 11861 AGATCAGACGCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTGACAT 11920 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | || | || | || |||| |||| || || || || || || || || |||| Sbjct 11921 TGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCA 11980 Query 48714 CAAAAATCTGCAT 48726 | || |||||||| Sbjct 11981 CGAAGATCTGCAT 11993 >seq35386 Length=12911 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 48537 CCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAA 48596 |||| || |||||||| || | | || ||||||| |||||||| ||| || | | Sbjct 4747 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 4688 Query 48597 TTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG 48656 | | |||||||| || ||| | | |||||||||| ||||||||||||| | Sbjct 4687 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 4628 Query 48657 CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAA 48716 | ||| | || | | |||| |||| || ||||| || || || || |||||||||| Sbjct 4627 CAATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACAA 4568 Query 48717 AAATCTGCAT 48726 | |||||||| Sbjct 4567 AGATCTGCAT 4558 >seq12976 Length=6227 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 48537 CCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAA 48596 |||| || |||||||| || | | || ||||||| |||||||| ||| || | | Sbjct 3690 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 3631 Query 48597 TTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG 48656 | | |||||||| || ||| | | |||||||||| ||||||||||||| | Sbjct 3630 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 3571 Query 48657 CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAA 48716 | ||| | || | | |||| |||| || ||||| || || || || |||||||||| Sbjct 3570 CAATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACAA 3511 Query 48717 AAATCTGCAT 48726 | |||||||| Sbjct 3510 AGATCTGCAT 3501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421061611684928