Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq30472 120 3e-22 seq32285 102 7e-17 seq35386 89.7 5e-13 seq12976 89.7 5e-13 >seq30472 Length=20972 Score = 120 bits (132), Expect = 3e-22 Identities = 159/219 (73%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||||||||||| || || ||||| || | ||| || ||||| ||| || || Sbjct 12007 CGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCT--TAGCGTACGAC 12064 Query 94853 --TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||||||||||| || ||| | ||||| | | ||||| || || || || ||||| | Sbjct 12065 CGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCTTCCT 12124 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | ||||| ||||||| | ||| | ||| | | || ||||||| ||||| Sbjct 12125 TGTCTTGGATTTTCTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCAAGCGTGA 12184 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || || || || ||||| || |||||||||| Sbjct 12185 TCGTCTTGCCCGTCAGCGTCTTCACGAAAATCTGCATGC 12223 Score = 114 bits (126), Expect = 1e-20 Identities = 158/219 (72%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||||||||||| || || ||||| || | ||| || ||||| ||| || || Sbjct 11779 CGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCT--TAGCGTACGAC 11836 Query 94853 --TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||||||||||| || ||| | ||||| | | ||||| || || || || ||||| | Sbjct 11837 CGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCTTCCT 11896 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | ||||| |||||| | ||| | ||| | | || ||||| | ||||| Sbjct 11897 TGTCTTGGATTTTCTGCTTGACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGA 11956 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || || || || ||||| ||||||||||||| Sbjct 11957 TCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATGC 11995 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||||||||||| || || ||||| || | ||| || ||||||| | || || Sbjct 12235 CGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTCA--GCGTACGAC 12292 Query 94853 --TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||||||||||| || ||| | || || | | ||||| || || || || ||||| | Sbjct 12293 CGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCT 12352 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | ||||| |||||| ||| | ||| | | || ||||| | ||||| Sbjct 12353 TATCTTGGATTTTCTGCTTGACATTATCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGA 12412 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || || || || ||||| ||||||||||| Sbjct 12413 TCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 12449 >seq32285 Length=18199 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| ||||| ||||| || | ||| || ||||||| ||| Sbjct 8362 CGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGCCCG 8421 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| | ||||| | | ||||| || || || || || || ||| Sbjct 8422 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTG 8481 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| ||| ||| | ||| | ||| | | || || || | |||||| Sbjct 8482 TCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACATCTAGCGTGATC 8541 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || | ||| ||||| |||||||||||| Sbjct 8542 GTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATG 8577 >seq35386 Length=12911 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| | ||||| | | ||||| || || || || ||||| ||| Sbjct 4712 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 4653 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| |||||| | | | |||| | | || || || | ||||||| Sbjct 4652 TCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACATCGAGCGTGATG 4593 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || ||||| || || ||||||||||||||||||||| || Sbjct 4592 GTCTTTCCCGTCAGGGTTTTCACAAAGATCTGCATGATT 4554 >seq12976 Length=6227 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| | ||||| | | ||||| || || || || ||||| ||| Sbjct 3655 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTG 3596 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| |||||| | | | |||| | | || || || | ||||||| Sbjct 3595 TCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACATCGAGCGTGATG 3536 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || ||||| || || ||||||||||||||||||||| || Sbjct 3535 GTCTTTCCCGTCAGGGTTTTCACAAAGATCTGCATGATT 3497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448084268782080