Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq31840 145 1e-30 seq29961 122 1e-23 seq1707 116 6e-22 seq32476 89.7 8e-14 seq29712 86.0 1e-12 seq26911 84.2 3e-12 seq35607 80.6 4e-11 seq27685 80.6 4e-11 seq8114 80.6 4e-11 >seq31840 Length=11402 Score = 145 bits (160), Expect = 1e-30 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||||||||| || || Sbjct 8790 CGCAAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 8731 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || |||||||| || || ||||| || || | |||| || |||| Sbjct 8730 CCGTCGTCTCGCACGTCGTGGCGGTGTGAAGCGCATCAGCGGCCTCATCTACGAGGAGAC 8671 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| |||||||| ||| |||||||| || | || ||| || || Sbjct 8670 CCGCGGTGTGCTCAAGGTCTTCCTCGAGAACGTTATCCGCGACTCCGTCACCTACACGGA 8611 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| ||||| || || || ||||||| |||| || || | || ||||| || Sbjct 8610 GCACGCTCGCCGTAAAACCGTGACGGCCATGGACGTCGTGTACGCTCTCAAGCGTCAGGG 8551 Query 16672 CCG 16674 ||| Sbjct 8550 CCG 8548 >seq29961 Length=11779 Score = 122 bits (134), Expect = 1e-23 Identities = 183/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || ||||| || | | | | ||||| || ||||| || |||||||||||||| ||| Sbjct 9331 GCAAAACGTCACCGGAAAATTTTACGAGACAATATCCAGGGCATCACCAAGCCAGCCATC 9390 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||||||||||| ||| ||| | | |||| |||||||| | || | Sbjct 9391 CGCCGCCTGGCTCGTCGTGCTGGTGTCCTCAGGATGTCTGCCATGGTCTATTATGAAACC 9450 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||| | | || || || | | || | ||||||| | || || ||| Sbjct 9451 CGCGCTGTGCTGAGGGTGTTTCTAGGGAACCTCATTCGTGATGCTGTAACTTACACGGAG 9510 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || | || || ||||||||||| |||||| || | ||||| |||| || ||||| Sbjct 9511 CATGGAAATCGGAAGACTGTCACTGGAATGGATGTCATTCATGCACTGAAGCGCCAAGGA 9570 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||||| ||||| Sbjct 9571 CGAACGCTTTATGGGTTTGG 9590 >seq1707 Length=3409 Score = 116 bits (128), Expect = 6e-22 Identities = 173/243 (71%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||||||| || || ||||| || |||||||| || |||||||| || || || Sbjct 1300 GCCAAGCGTCATCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAACCGGCCAT 1358 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| || ||||| || || ||||| || || | |||| || |||| Sbjct 1359 CCGTCGTCTGGCACGCCGTGGCGGCGTGAAGCGCATCAGCGGCCTCATCTACGAGGAGAC 1418 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| | | ||| |||| || | || ||| || || Sbjct 1419 CCGCGGTGTGCTCAAGGTCTTCCTTGAAAACGTCATCCGCGACTCGGTCACCTACACGGA 1478 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| || || || ||||||| | ||||| || | || || || || Sbjct 1479 GCACGCGCGCCGTAAAACCGTTACGGCCATGGACGTTGTCTACGCGCTCAAGCGCCAGGG 1538 Query 16672 CCG 16674 || Sbjct 1539 ACG 1541 >seq32476 Length=19450 Score = 89.7 bits (98), Expect = 8e-14 Identities = 166/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 16439 CGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCG 16497 |||||||||| |||| ||||| || ||||| || || |||||||||||||| ||||| || Sbjct 18975 CGTCATCGCAAGATC-CTTCGCGACAACATACAGGGCATCACCAAGCCAGCGATCCGCCG 18917 Query 16498 TCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGA 16557 || |||||||| | ||| || | || | || || | ||||| | |||| || | Sbjct 18916 ACTTGCTCGTCGGGCTGGTGTAATTCGGATGTCCGGCCTCGTCTACCACGAGACGCGCGC 18857 Query 16558 TGTTTTGAAGA--TCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCAC 16615 || ||| || | | ||||| | | |||| ||||| || || | || || Sbjct 18856 AGTGCTGAGGACGTTTGTGTCAAGTC--TCATCCGCGATGCCATCACTTACTCGGAACAT 18799 Query 16616 GCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || | ||||||||| |||| |||||| || |||| || | ||||| ||||| || Sbjct 18798 GCGCACCGTAAGACTATCACAGGCATGGACGTCATCTACGCGCTAAAACGCCAAGGGCG 18740 >seq29712 Length=3629 Score = 86.0 bits (94), Expect = 1e-12 Identities = 165/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 16439 CGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCG 16497 ||||||| || |||| ||||| || ||||| || || |||||||||||||| ||||| || Sbjct 1123 CGTCATCACAAGATC-CTTCGCGACAACATACAGGGCATCACCAAGCCAGCGATCCGCCG 1181 Query 16498 TCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGA 16557 || |||||||| | ||| || | || | || || | ||||| | |||| || | Sbjct 1182 ACTTGCTCGTCGGGCTGGCGTAATTCGGATTTCCGGCCTCGTCTACCACGAGACGCGCGC 1241 Query 16558 TGTTTTGAAGA--TCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCAC 16615 || ||| || | | ||||| | | |||| ||| | || || | || ||| Sbjct 1242 AGTGCTGAGGACGTTTGTGTCAAGTC--TCATCCGCGATACCATCACATACTCGGAACAC 1299 Query 16616 GCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || | ||||||||| |||| |||||| || |||| || | ||||| ||||| || Sbjct 1300 GCGCACCGTAAGACTATCACAGGCATGGACGTCATCTACGCGCTAAAACGCCAAGGGCG 1358 >seq26911 Length=568 Score = 84.2 bits (92), Expect = 3e-12 Identities = 173/255 (68%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 16439 CGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCG 16497 ||||||||| | || | | || |||||||||||||| || || | |||| || || Sbjct 399 CGTCATCGCTACATTT-TGCGTGATAACATCCAAGGCATTTCCCGTTCCTCTATTCGCCG 341 Query 16498 TCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGA 16557 ||| |||||||||| ||| || | || | |||| | | || | |||||||| ||| Sbjct 340 TCTCGCTCGTCGTGCTGGCGTTATCCGCATGTCTGCAATCGTGTGTGAAGAGACCCGTAG 281 Query 16558 TGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGC 16617 ||| | ||| | ||||| | | | | |||| || || | ||| ||| || || Sbjct 280 TGTGCTCAAGGTGTTCCTTAGCAACCTAATCCGCGACGCAGTAGTCTACTGCGACCATGC 221 Query 16618 TAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAA 16677 ||| || ||||| || | | |||| || | || || | || ||||||||||| | Sbjct 220 TAATCGAAAGACGGTGAAGACGGTGGACGTCCTGTACGCCCTTAAGCGTCAAGGCCGCAC 161 Query 16678 GATTTATGGTTTTGG 16692 | |||| || ||||| Sbjct 160 GCTTTACGGGTTTGG 146 >seq35607 Length=4460 Score = 80.6 bits (88), Expect = 4e-11 Identities = 164/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 16439 CGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCG 16497 ||||||| || |||| ||||| || ||||| || || |||||||||||||| ||||| || Sbjct 1881 CGTCATCACAAGATC-CTTCGCGACAACATACAGGGCATCACCAAGCCAGCGATCCGCCG 1939 Query 16498 TCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGA 16557 || |||||||| | ||| || | || | || || | ||||| | |||| || | Sbjct 1940 ACTTGCTCGTCGGGCTGGCGTAATTCGGATTTCCGGCCTCGTCTACCACGAGACGCGCGC 1999 Query 16558 TGTTTTGAAGA--TCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCAC 16615 || ||| || | | ||||| | | |||| ||||| || || | || || Sbjct 2000 AGTGCTGAGGACGTTTGTGTCAAGTC--TCATCCGCGATGCCATCACTTACTCGGAACAT 2057 Query 16616 GCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || | ||||||||| |||| |||||| || |||| || | ||| | ||||| || Sbjct 2058 GCGCATCGTAAGACTATCACAGGCATGGACGTCATCTACGCGCTAAAATGCCAAGGGCG 2116 >seq27685 Length=9986 Score = 80.6 bits (88), Expect = 4e-11 Identities = 178/262 (68%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || || || |||| ||| | | || |||| || ||||| || || || ||||| || Sbjct 8993 GCGAAACGCCACCGCAAGAT-TATCCGTGATAGTATTCAAGGGATTACTAAACCAGCAAT 9051 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || |||||||| ||||||| ||| || ||| | || || | || || | |||| Sbjct 9052 TCGGCGTCTGGCACGTCGTGCTGGCGTAGCGCGGATGTCAGGGCTCGTGTACCACGAGAC 9111 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCG-TTATCCATGATGCTTTCCACTATACCG 16610 || | |||| ||| | | || || ||| |||| | ||||||| || || | Sbjct 9112 CCGCGCTGTTCTGAGGGTGTTTCTTG-GACATCTTATTCGTGATGCTGTCACGTACTTAG 9170 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||| || | ||||| |||||| | ||||| | ||||| || | |||||||||| Sbjct 9171 AGCACGGCAACAGGAAGACGGTCACCGCAATGGACGTGGTCTACGCGCTAAAACGTCAAG 9230 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | | || || ||||| Sbjct 9231 GGCGCACTCTATACGGCTTTGG 9252 >seq8114 Length=5608 Score = 80.6 bits (88), Expect = 4e-11 Identities = 178/262 (68%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || || || |||| ||| | | || |||| || ||||| || || || ||||| || Sbjct 1357 GCGAAACGCCACCGCAAGAT-TATCCGTGATAGTATTCAAGGGATTACTAAACCAGCAAT 1299 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || |||||||| ||||||| ||| || ||| | || || | || || | |||| Sbjct 1298 TCGGCGTCTGGCACGTCGTGCTGGCGTAGCGCGGATGTCAGGGCTCGTGTACCACGAGAC 1239 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCG-TTATCCATGATGCTTTCCACTATACCG 16610 || | |||| ||| | | || || ||| |||| | ||||||| || || | Sbjct 1238 CCGCGCTGTTCTGAGGGTGTTTCTTG-GACATCTTATTCGTGATGCTGTCACGTACTTAG 1180 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||| || | ||||| |||||| | ||||| | ||||| || | |||||||||| Sbjct 1179 AGCACGGCAACAGGAAGACGGTCACCGCAATGGACGTGGTCTACGCGCTAAAACGTCAAG 1120 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | | || || ||||| Sbjct 1119 GGCGCACTCTATACGGCTTTGG 1098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79041436471104