Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq32329 82.4 7e-11 seq27878 82.4 7e-11 seq27877 82.4 7e-11 seq26115 82.4 7e-11 >seq32329 Length=12294 Score = 82.4 bits (90), Expect = 7e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 119645 GTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCAT 119704 |||||||||||| || || || || ||||| |||||||||| || || || | | ||| Sbjct 11729 GTACTCGCCCACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGCGAGATCATGTCCAT 11670 Query 119705 AAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCG 119764 | ||||| || || |||| | |||| ||||||| | ||| ||| || Sbjct 11669 CCAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACGCCCAACGAGTACAGCAGACG 11610 Query 119765 ATCTGCCACAAACTCGATGTATTCGCACATGGATTGCGAATTCATGCC 119812 || ||||||||||||||||| | ||||||| ||| |||||||| Sbjct 11609 GTCCGCCACAAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCC 11562 >seq27878 Length=10574 Score = 82.4 bits (90), Expect = 7e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 119645 GTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCAT 119704 |||||||||||| || || || || ||||| |||||||||| || || || | | ||| Sbjct 566 GTACTCGCCCACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGCGAGATCATGTCCAT 625 Query 119705 AAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCG 119764 | ||||| || || |||| | |||| ||||||| | ||| ||| || Sbjct 626 CCAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACGCCCAACGAGTACAGCAGACG 685 Query 119765 ATCTGCCACAAACTCGATGTATTCGCACATGGATTGCGAATTCATGCC 119812 || ||||||||||||||||| | ||||||| ||| |||||||| Sbjct 686 GTCCGCCACAAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCC 733 >seq27877 Length=1900 Score = 82.4 bits (90), Expect = 7e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 119645 GTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCAT 119704 |||||||||||| || || || || ||||| |||||||||| || || || | | ||| Sbjct 566 GTACTCGCCCACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGCGAGATCATGTCCAT 625 Query 119705 AAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCG 119764 | ||||| || || |||| | |||| ||||||| | ||| ||| || Sbjct 626 CCAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACGCCCAACGAGTACAGCAGACG 685 Query 119765 ATCTGCCACAAACTCGATGTATTCGCACATGGATTGCGAATTCATGCC 119812 || ||||||||||||||||| | ||||||| ||| |||||||| Sbjct 686 GTCCGCCACAAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCC 733 >seq26115 Length=10575 Score = 82.4 bits (90), Expect = 7e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 119645 GTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCAT 119704 |||||||||||| || || || || ||||| |||||||||| || || || | | ||| Sbjct 10010 GTACTCGCCCACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGCGAGATCATGTCCAT 9951 Query 119705 AAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCG 119764 | ||||| || || |||| | |||| ||||||| | ||| ||| || Sbjct 9950 CCAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACGCCCAACGAGTACAGCAGACG 9891 Query 119765 ATCTGCCACAAACTCGATGTATTCGCACATGGATTGCGAATTCATGCC 119812 || ||||||||||||||||| | ||||||| ||| |||||||| Sbjct 9890 GTCCGCCACAAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCC 9843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478441449436160