Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq36271 360 5e-94 >seq36271 Length=16985 Score = 360 bits (398), Expect = 5e-94 Identities = 1166/1796 (65%), Gaps = 26/1796 (1%) Strand=Plus/Minus Query 363377 TCGAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATG 363436 ||||||| || ||||| | |||||| | ||| | |||||| | || |||| | Sbjct 2937 TCGAGTACGACTACTTCGGCTTCAAGACGCTCGAGCGAGGCTACCTCTTCCGCGTCAACG 2878 Query 363437 GTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCC 363496 | | | || || ||||||||||| ||| | ||||| || || | || ||||| Sbjct 2877 GGAAGGTCGTGGAGCGCCCGCAGCAGATGATCATGCGCGTGGCGCTGGGCATCCACAAGA 2818 Query 363497 CGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGT-GCTCGTGTATT-CACGCA 363554 |||| ||||| ||||| | | || || |||| | || || ||| || |||||| Sbjct 2817 CGGACGTTGAGGCCGCTCTGCAGACGTACGAGCTCAT--GTCGCAGATGTTTTTCACGCA 2760 Query 363555 CGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCT 363614 ||| ||||| || ||| ||| || || || | ||| ||| | || || ||||| || Sbjct 2759 CGCGACGCCCACGCTGTTCAACGCCGGCACGCCGCGTCCTCAGCTCTCGTCCTGCTTCCT 2700 Query 363615 TCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCT 363674 || ||| ||||||| || || ||||| || | |||||||| ||| | ||||| Sbjct 2699 CCTGGCCATGCAGGACGACTCGATTGAGGGCATTTACGACACACTGAAGCAGTGTGCGTG 2640 Query 363675 TATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAG 363734 ||| |||||| || ||||| ||||| | || |||||| | ||||| |||||| Sbjct 2639 TATCTCCAAGTGGGCGGGCGGGATTGGCATCAGTATGCACAATATCCGTGCGACGAACAG 2580 Query 363735 TTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGA 363794 |||||||||||||| || | ||| || || | | |||||||| ||||||||| | Sbjct 2579 CTACATTCGCGGCACGAATGGCTCCTCCAACGGCATCATCCCCATGCTGCGTGTGTTTAA 2520 Query 363795 CAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTA 363854 | | || || | ||||| |||||||| || || |||||||| || |||| || || || Sbjct 2519 CGACACGGCACGATACGTGGACCAGGGCGGCGGCAAGCGCAAGGGATCGTTCGCCATCTA 2460 Query 363855 TCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAA 363914 || ||||| || ||||| | || ||||| || || || ||||| ||| || || Sbjct 2459 CCTGGAGCCCTGGCACGCCGACGTGTTCGAGTTCCTGGACCTGCGGAAGAACCACGGCAA 2400 Query 363915 AGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAA 363974 ||| || || || || |||||||| || || ||||| | || | || ||||| Sbjct 2399 CGAGCTGCACCGCGCGCGCGACCTGTTCTACGCGCTCTGGGTGCCGGATCTCTTCATGAA 2340 Query 363975 GCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTC 364034 |||||| || |||| | ||| ||||| ||||| |||| || || || | Sbjct 2339 GCGCGTCGAAGCAGACGGCCAGTGGAGCCTCTTCTGCCCCAACGAGGCGCCCGGGCTCTA 2280 Query 364035 CGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGC 364094 ||| ||||| ||||| | | || || ||||||||||| || ||||||| || Sbjct 2279 CGAGTGCTGGGGCGACGAGTTCGAGGCCCTGTACGAAAAGTACGAGAAGGAGGGACGCGC 2220 Query 364095 TCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGAC 364154 ||| ||||| || || ||| |||| ||||| ||||| |||| | ||||||||||| Sbjct 2219 TCGCAAGACGATCAAAGCGCAGCAGCTGTGGTTCTCCATCCTGGACGCCCAGATTGAGAC 2160 Query 364155 AGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCT 364214 || || | ||| ||| ||| || ||| |||||||||||| ||||||||| |||| Sbjct 2159 GGGCGTGCCGTTCATGCTGTTCAAGGACTCGGCCAACCGCAAGTCGAACCAGCAGAACCT 2100 Query 364215 TGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGA 364274 || || || | ||||||| | || ||| | || || ||| | | || ||||| Sbjct 2099 GGGCACGATCCGCTCGAGCAACTTGTGCTGTGAGGTCATGGAGTACTCGTCGCCTGACGA 2040 Query 364275 GACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGA---TGGTAC 364331 | ||||| || ||||| ||||| | ||||| || ||| || |||| || Sbjct 2039 GGTGGCCGTGTGCAACCTGGCGTCCGTGGCGCTGCCCAAGTTCGTGGAAGAGGGCGGCGT 1980 Query 364332 TTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGT 364391 || || |||| | || || || || || | | || |||| || ||||||| Sbjct 1979 GTTCAACTACCACAAGCTGTACGAGGTGACGAAGGTGGTGACCCGCAACCTGAACAAGGT 1920 Query 364392 TATCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATGCGTCATCGCC 364450 || ||| || || || || | | || || || || || || ||||| || |||| Sbjct 1919 CATTGACGTCAACTACTACCCCGTGGCGGAGGCGCGCACG-TCCAACATGCGCCACCGCC 1861 Query 364451 CGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTG 364510 | | ||| | || || ||||| ||||| |||| || || | | | || || | Sbjct 1860 CCGTCGGTATCGGCGTTCAGGGTCTCGCCGACGCGTTCATCCTCATGGACTACGCGTTCG 1801 Query 364511 ATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAA 364570 | || | || || | || || ||| |||||||||| || || || | || | | Sbjct 1800 AGAGCCCGCAAGCCCGCGAGCTCAACAAGAAGATCTTTGAGACCATTTACTACGCTTCCA 1741 Query 364571 TGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCC 364630 || | ||| || | || || ||| |||| || | |||| || | Sbjct 1740 TGGAGACGTCGATGGAGATCGCCAAGGAGCTGGGCCCGTACGAGACGTTCCAGGGCTCTC 1681 Query 364631 CTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCC---ATCTGTCCGAT 364687 || |||| | |||||||| || | ||| ||||| || || | | | Sbjct 1680 CTGCCAGCAAGGGCATCTTCCAGTTCGACATGTGGGGCGTCACCCCTGATTCGGGGCTGT 1621 Query 364688 GGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTA 364747 || |||||| ||||| ||||| | ||||| || | |||||||| || | Sbjct 1620 GGGACTGGGCCACGCTCAAGCAGAACGTGATTAAGCACGGCATCCGCAACTCGCTGCTCG 1561 Query 364748 CAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAAC 364807 ||||| ||||| ||||| || || || || ||||| || |||||||||| | |||| | Sbjct 1560 TCGCGCCGATGCCGACGGCCTCGACGGCTCAAATCCTGGGTAACAACGAGTCCATCGAGC 1501 Query 364808 CGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATA 364867 ||| || ||| | || ||||| || ||| | || || || | | || || | Sbjct 1500 CGTACACGTCCAACATGTACAACCGCCGCGTGCTTGCGGGCGAGTTCACCATTGTGAACA 1441 Query 364868 AGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCA--TGAAGAACTA 364925 ||||||| | | ||| || || || || | || | | | || ||| | Sbjct 1440 AGTACCTGATGAGGGAGCTGATTGA--GCTGGGCATCTGGACCCCGGAGGTGCGCAACCA 1383 Query 364926 TATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGAT--TTCCAGAAGATCTGAAG 364983 ||| | || | || || |||||||| | || ||| |||| || | | ||| Sbjct 1382 GATCCTGAACGATGGCGGCTCGGTGCAGAAGGT--CAAGATCATTCCGGACAAAATCAAG 1325 Query 364984 CCTATTTACAAAACCGTATGGGAAATTTCCATGC-GA--ACTCTCATTGATATGGCGGCC 365040 | ||||| || || ||||| || || || || || | | || | ||||| Sbjct 1324 GACAAGTACAAGACGGTGTGGGAGAT---CAAGCAGAAGACGGTGTTGGACCTCTCGGCC 1268 Query 365041 GATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACC 365100 || ||||| || | || || |||||||||||| | ||| | ||| | | || ||| Sbjct 1267 GACCGCGGCGCCTACATTTGCCAGAGCCAGTCGCTCAACATCCACATCGCCGACCCGACC 1208 Query 365101 TCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | |||||| ||||||||||| ||||||| |||||| || || ||||| || Sbjct 1207 ATCAGCAAGCTCACATCCATGCACTTCTACGCCTGGAAAAAGGGGCTCAAGACGGG 1152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302736931277696