Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq36271 206 3e-48 seq30472 161 9e-35 seq32285 138 1e-27 seq35386 107 2e-18 seq12976 107 2e-18 seq25936 96.9 3e-15 >seq36271 Length=16985 Score = 206 bits (228), Expect = 3e-48 Identities = 929/1443 (64%), Gaps = 63/1443 (4%) Strand=Plus/Plus Query 145070 AACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCG 145129 |||||||| || | ||| || || |||| ||| |||||| | || || | |||||| Sbjct 1455 AACTCGCCCGCAAGCACGCGGCGGTTGTACATGTTGGACGTGTACGGCTCGATGGACTCG 1514 Query 145130 TTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTG 145189 || || |||||||||||||| |||| || || ||||| ||| || | | || ||| Sbjct 1515 TTGTTACCCAGGATTTGAGCCGTCGAGGCCGTCGGCATCGGCGCGACGAGCAGCGAGTTG 1574 Query 145190 CGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCATAG---CGAAGTC 145246 || | ||||||||| | | || | ||| ||||| |||| ||||| || |||| Sbjct 1575 CGGATGCCGTGCTTAATCACGTTCTGCTTGAGCGTGGCCCAGTCCCACAGCCCCGAATCA 1634 Query 145247 GGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAG 145306 || | ||| ||||||||||| |||| || ||||||| |||||| || ||| || || Sbjct 1635 GGGGTGACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTGGCAGGAGAGCCCTGGAAC 1694 Query 145307 GAACTGTAACTGCCCCAAGT-TTTGGCGAGCTCGCAAC-TCGCCTCCAGAGCGCCGAAAT 145364 | || || | |||| | ||||||| ||| || | || ||||| | || | | Sbjct 1695 G-TCTCGTACGGGCCCAGCTCCTTGGCGATCTC-CATCGACGTCTCCATGGAAGCGTAGT 1752 Query 145365 AAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCATGC 145424 |||| ||||| || | | |||||||| |||| ||||||| ||| | Sbjct 1753 AAATGGTCTCAAAGATCTTCTTGTTGAGCTCGCGGGCTTGCGGGCTCTCGAACGCGTAGT 1812 Query 145425 GCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCA 145484 || || | || || |||||||| ||||| | || | |||| ||| || || || Sbjct 1813 CCATGAGGATGAACGCGTCGGCGAGACCCTGAACGCCGATACCGACGGGGCGGTGGCGCA 1872 Query 145485 TGTTGCTCATCCTCGCCGACTCGATAGGATA-TCGATTACGGTCGATAATTTTATTCAAG 145543 ||||| | | | |||| | | | || || | | | || ||| || | || |||| | Sbjct 1873 TGTTGGACGTGCGCGCCTCCGCCACGGGGTAGTAGTTGAC-GTCAATGACCTTGTTCAGG 1931 Query 145544 TTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAAC---CGAGCCTCG 145600 || || || ||||| || | | || ||| | ||| ||| | |||| Sbjct 1932 TTGCGGGTCACCACCTTCGTCACCTCGTACAGCTTGTGGTAGTTGAACACGCCGCCCTCT 1991 Query 145601 TCAACGACC--ACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCT 145658 || |||| | |||| || | ||||||| || || || ||| ||| | Sbjct 1992 TCCACGAACTTGGGCAGC--------GCCACGGACGCCAGGTTGCACACGGCCACCTCGT 2043 Query 145659 C-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGA 145717 | |||| || ||| | | || ||| |||||| ||||| | ||| || ||||| Sbjct 2044 CAGGCGACG-AGTACTCCATGACCTCACAGCACAAGTTGCTCGAGCGGATCGTGCCCAGG 2102 Query 145718 TTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTC 145777 || ||||| || || | |||| || ||||||| | |||||| |||| |||| ||| Sbjct 2103 TTCTGCTGGTTCGACTTGCGGTTGGCCGAGTCCTTGAACAGCATGAACGGCACGCCCGTC 2162 Query 145778 TCCACCTGCGTCTCCACGAT--AAAACGGTGCAAGTCCTGCGCACGCACCTGCTGCTGGT 145835 || | ||| | |||| ||| | ||| || | |||||| | | || | Sbjct 2163 TCAATCTGGGCGTCCAGGATGGAGAAC--CACAGCTGCTGCGCTTTGATCGTCTTGCGAG 2220 Query 145836 AGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGG 145895 ||| ||||| | ||||| || ||| || |||| ||| || || |||| ||| Sbjct 2221 CGCGTCCCTCCTTCTCGTACTTTTCGTACAGGGCCTCGAACTCGTCGCCCCAGCACTCGT 2280 Query 145896 ACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCT 145955 | || ||||| || |||||| || | || ||| ||||| || | |||||||| Sbjct 2281 AGAGCCCGGGCGCCTCGTTGGGGCAGAAGAGGCTCCACTGGCCGTCTGCTTCGACGCGCT 2340 Query 145956 CCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGT--CGCGCGCTTTGCAATCCTC 146013 ||| || | ||| |||||||| |||||||| | || || ||||||| |||| ||| Sbjct 2341 TCATGAAGAGATCCGGCACCCAGAGCGCGTAGAACAGGTCGCGCGCGCGGTGCA--GCTC 2398 Query 146014 AGCACCCATGTTTC-GCTTCAAATTAAGCACACT-ATAGATGTCCGCGTGCCACGGTTCA 146071 | || || ||| | || | || | ||| | | ||| |||||||| || || Sbjct 2399 -GTTGCCGTGGTTCTTCCGCAGGTCCAGGA-ACTCGAACACGTCGGCGTGCCAGGGCTCC 2456 Query 146072 ATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTGGTCCACGTGACGTACCATG 146128 | |||| ||||| | ||| || || || ||| ||||||||||||| ||| || || Sbjct 2457 AGGTAGATGGCGAACGATCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTATCGTGCCGTG 2516 Query 146129 TTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGT----AGAGTT 146184 | |||||| || |||| |||||| || |||| ||| ||| ||||| || | Sbjct 2517 TCGTTAAACACACGCAGCATGGGGATGATGCCGTTGGAGGAGCCATTCGTGCCGCGAATG 2576 Query 146185 TATTCTGGTGCCGCGGGAGCGCACGCA----ATGAACATTCACGCCGAGACCGCCGCCGT 146240 || ||| | || |||||| | || | | | | ||| | ||||| | Sbjct 2577 TA-GCTGTT--CG-----TCGCACGGATATTGTGCATACTGATGCCAATCCCGCCCGCCC 2628 Query 146241 ACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCGCTTC 146300 ||||||| ||| || || | || || ||||| ||||| ||||| ||| Sbjct 2629 ACTTGGAGATACACGCACACTGCTTCAGTGTGTCGTAAATGCCCTCAATCGAGTCGTCCT 2688 Query 146301 GAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACG 146360 | ||| | || || ||||| || | | ||| | |||||| || || ||||| || Sbjct 2689 GCATGGCCAGGAGGAAGCAGGACGAGAGCTGAGGACGCGGCGTGCCGGCGTTGAACAGCG 2748 Query 146361 TCGGGCTCGCGTGCGT---AAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGT 146417 | || |||||||||| |||||| | | ||| | | ||||| | | |||| Sbjct 2749 TGGGCGTCGCGTGCGTGAAAAACATCT---GCGACATGAGCTCGTACGTCTGCAGAGCGG 2805 Query 146418 CTTGAATGT-CGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGC 146476 | | || || |||| || ||||||| || |||||||||| ||| || || || ||| Sbjct 2806 CCTCAACGTCCGTC-TTGTGGATGCCCAGCGCCACGCGCATGATCATCTGCTGCGGGCGC 2864 Query 146477 TCC 146479 ||| Sbjct 2865 TCC 2867 >seq30472 Length=20972 Score = 161 bits (178), Expect = 9e-35 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| ||||||||| || || | || |||||||| || |||||||| ||||| Sbjct 11994 GCCACCGCGCAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCT 12053 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || |||||| ||||||||||| ||| |||| | |||||||||||| || || Sbjct 12054 TAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 12113 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||||||| ||||| |||||||||||||| | || | | || | | ||| | Sbjct 12114 GATTCCTTCCTTGTCTTGGATTTTCTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCAC 12173 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| | || | || || || || || || || ||||||||||||||| Sbjct 12174 GTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAAATCTGCATG 12222 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| ||||||||| || || | || |||||||| || |||||||| ||||| Sbjct 12222 GCCACCGCGCAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCT 12281 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || |||||| ||||||||||| ||| | || | |||||||||||| || || Sbjct 12282 CAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGCGG 12341 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| || || |||||||||||||| | || | | || | | ||| | Sbjct 12342 GATGCCTTCCTTATCTTGGATTTTCTGCTTGACATTATCGATCGAGTCCGAAGGCTCCAC 12401 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| || | || || || || || || || ||||| |||||||| Sbjct 12402 GTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 12449 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||||||||| || || | || |||||||| || |||||||| ||||| Sbjct 11767 CCGCCACGAAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTT 11826 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 11827 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGTGGG 11886 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||||||||||| | || | | || | | ||| | | Sbjct 11887 ATGCCTTCCTTGTCTTGGATTTTCTGCTTGACATTGTCGATCGAGTCCGAAGGCTCCACG 11946 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | || || || || || || || ||||| ||||||||| Sbjct 11947 TCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 11994 >seq32285 Length=18199 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| ||||||||| | || | || |||||||| || |||||||| ||||| Sbjct 8349 GCCGCCACGCAGACGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 8408 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| ||| |||| | |||||||||||| || || Sbjct 8409 CAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 8468 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| |||||||||||| | | || | | || | | ||| | Sbjct 8469 GATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 8528 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || || || || | ||| || ||||| ||||||||| Sbjct 8529 ATCTAGCGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATG 8577 Score = 125 bits (138), Expect = 7e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||||||||| | || | || |||||||| || |||||||| |||||| Sbjct 7666 CCGCCACGCAGACGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 7725 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 7726 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 7785 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || || || ||||| |||||||||||| Sbjct 7786 ATGCCCTCCTTGTCTTGGATTTTCTGCTT 7814 >seq35386 Length=12911 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | ||||| |||||| ||||||||||| ||| ||| Sbjct 4747 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 4688 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||||| || ||||| ||||| ||||| |||||||||||||| | | Sbjct 4687 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 4628 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | || | | ||| | |||| || | ||| || || || || ||||| || | Sbjct 4627 CAATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACAA 4568 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 4567 AGATCTGCATGA 4556 >seq12976 Length=6227 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | ||||| |||||| ||||||||||| ||| ||| Sbjct 3690 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 3631 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||||| || ||||| ||||| ||||| |||||||||||||| | | Sbjct 3630 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 3571 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | || | | ||| | |||| || | ||| || || || || ||||| || | Sbjct 3570 CAATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACAA 3511 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 3510 AGATCTGCATGA 3499 >seq25936 Length=21514 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | || | |||||||||||| || |||||||| || Sbjct 2478 CCACCACGCAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 2419 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 2418 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGGGGG 2359 Query 131128 ATTCCT 131133 |||||| Sbjct 2358 ATTCCT 2353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471794918891520