Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq32285 95.1 1e-14 seq30472 91.5 1e-13 seq35386 82.4 6e-11 seq12976 82.4 6e-11 >seq32285 Length=18199 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| || |||||||| || |||||||||||| | Sbjct 8350 CCGCCACGCAGACGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 8409 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||||| || ||||| || | || || ||||| ||||| || Sbjct 8410 AGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 8469 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| |||| ||||||||| | | | | | ||| |||||| Sbjct 8470 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACA 8529 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||| || || || |||| || || || || |||||||| Sbjct 8530 TCTAGCGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 8576 >seq30472 Length=20972 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| |||| ||| |||||||| || |||||||||||| | Sbjct 12223 CCACCGCGCAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTC 12282 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||||| || ||||| || |||| || ||||| ||||| || Sbjct 12283 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGCGGG 12342 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || || || |||| |||||| || | | | | ||| |||||| Sbjct 12343 ATGCCTTCCTTATCTTGGATTTTCTGCTTGACATTATCGATCGAGTCCGAAGGCTCCACG 12402 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||||| || || || |||||||| || || || |||||||| || Sbjct 12403 TCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATCTT 12452 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| |||| ||| |||||||| || |||||||||||| Sbjct 11767 CCGCCACGAAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTT 11826 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||||| || ||||| || | || || ||||| ||||| || Sbjct 11827 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGTGGG 11886 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| |||| |||||| || | | | | | ||| |||||| Sbjct 11887 ATGCCTTCCTTGTCTTGGATTTTCTGCTTGACATTGTCGATCGAGTCCGAAGGCTCCACG 11946 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||| || || || |||||||| || || || |||||||| Sbjct 11947 TCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 11993 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| |||| ||| |||||||| || |||||||||||| Sbjct 11995 CCACCGCGCAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTT 12054 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||||| || ||||| || | || || ||||| ||||| || Sbjct 12055 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 12114 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || ||||| |||| |||||| || | | | | | ||| |||||| Sbjct 12115 ATTCCTTCCTTGTCTTGGATTTTCTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACG 12174 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||| || || || |||||||| || || ||||||||||| Sbjct 12175 TCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAAATCTGCAT 12221 >seq35386 Length=12911 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 16746 CCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAA 16805 |||| || ||||||||||| | | || | ||||||| | || ||||| || | | Sbjct 4747 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 4688 Query 16806 TAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGC 16865 | || ||||| ||||| || | ||| || ||||| |||| |||||| || | | Sbjct 4687 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 4628 Query 16866 CCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAA 16925 | | |||| |||||| || | |||||||| ||||| ||||| ||||| |||| Sbjct 4627 CAATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACAA 4568 Query 16926 AAATCTGCAT 16935 | |||||||| Sbjct 4567 AGATCTGCAT 4558 >seq12976 Length=6227 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 16746 CCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAA 16805 |||| || ||||||||||| | | || | ||||||| | || ||||| || | | Sbjct 3690 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 3631 Query 16806 TAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGC 16865 | || ||||| ||||| || | ||| || ||||| |||| |||||| || | | Sbjct 3630 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 3571 Query 16866 CCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAA 16925 | | |||| |||||| || | |||||||| ||||| ||||| ||||| |||| Sbjct 3570 CAATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACAA 3511 Query 16926 AAATCTGCAT 16935 | |||||||| Sbjct 3510 AGATCTGCAT 3501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404905686094720