Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq31996 93.3 5e-14 seq34995 91.5 2e-13 >seq31996 Length=23101 Score = 93.3 bits (102), Expect = 5e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 126181 GTGTAAATGTAGCGGGGAGCTG-CCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACTG 126239 ||| | ||||| || || |||| ||| |||||| ||||||| ||||| ||||| ||||| Sbjct 11508 GTGAAGATGTACCGAGG-GCTGGCCGCATCCTTTCCTCCCTGCAACCTGGTGCCGAACTG 11566 Query 126240 ACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGAC 126299 |||| ||| | || || | ||| ||||||| || |||||||||||||| | ||||| Sbjct 11567 ACCGGACGGGTACAGCAGCGGCAGGTTGTTGGAGCCTACAAAGTCCTGCGCCATGTTGAC 11626 Query 126300 AATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGCC 126359 || ||| | || ||||||||| | ||| | || |||||| ||| || Sbjct 11627 GATCGTCGAGTGCAACGAAGCCTCGCCGTGATGGTACGCCGTGTGCTCGCTGCAGTAACC 11686 Query 126360 GCTCAGCTGCGCAACCTTGA 126379 ||||| || ||||||| Sbjct 11687 TGCGAGCTGAGCGACCTTGA 11706 >seq34995 Length=13572 Score = 91.5 bits (100), Expect = 2e-13 Identities = 175/257 (68%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 15398 ATATTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCAC 15457 || || || || ||||||| ||| || || || || || ||||| | |||||||| ||| Sbjct 4566 ATCTTCATCGGCCCGACGTTCTACCAGCGTCTGAAGCATATGGTCGACGACAAGATCCAC 4507 Query 15458 GCGCGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAA 15517 |||| |||| || | ||||||| ||| |||||||||| || || ||| Sbjct 4506 TCGCGCTCGCGTGGGCCCGTGACGATGCTGACCCGCCAGCCCATGGAAGGCCGTGCGCGC 4447 Query 15518 GGCGGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGT---GCACGGCGCC 15574 | || ||||| || | ||||||||||| || || |||| | ||| ||| | Sbjct 4446 GAGGGCGGCCTGCGAATGGGAGAGATGGAGCGCGATTG---TCTGATCTCGCATGGCTCG 4390 Query 15575 ACCCAATTCCTCAACGAGCGCATGTTTCTCAACAGTGACCCGTTCCAGATTGACGTGTGC 15634 || | ||||||| || ||| |||| |||| ||| ||| || || |||||||| Sbjct 4389 GCCAACTTCCTCATGGACCGCCTGTTCGCCAACTCGGACGCGTACCGCGTTCACGTGTGC 4330 Query 15635 AAAGACTGCGGCATGAT 15651 | | ||||||||| || Sbjct 4329 GATGTCTGCGGCATCAT 4313 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 15050 CCCG-AGATTGGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCACGTGCGGCATGAT 15108 |||| |||||||||||||||| ||| || | || ||||||||| ||| |||| Sbjct 4900 CCCGCAGATTGGCGACAAGTTCGCCTCGCGTCACGGACAGAAGGGCACGATCGGGATGAC 4841 Query 15109 TTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCAA 15168 | || || ||||||||||| || || | | ||||| |||||||| || || |||| Sbjct 4840 GTACCGGCAAGAAGACATGCCGTTCACGGTGGAGGGCATTACGCCCGATATCGTCGTCAA 4781 Query 15169 CCCCAACTGCATCCCGTCCCGCATGAC 15195 ||| || ||| ||||| || ||||| Sbjct 4780 CCCGCACGCCATTCCGTCGCGTATGAC 4754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611109781452800