Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_008194.1 Length=74483 Score E Sequences producing significant alignments: (Bits) Value seq36741 138 5e-28 >seq36741 Length=22457 Score = 138 bits (152), Expect = 5e-28 Identities = 327/492 (66%), Gaps = 9/492 (2%) Strand=Plus/Minus Query 65557 CATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGA 65616 ||||||||| || || || | ||| || | ||||||||||| | ||||| ||| |||| Sbjct 15244 CATCGACGCGGAACATGCCATTGACGCTCACTACGCCAAGGCTTTGGGTGTCGACATCGA 15185 Query 65617 CAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCT 65676 | || || ||||||||| | ||||| | || |||||||||| || || Sbjct 15184 CGCGCTGTACGTCTCGCAGCCGGACTCAGGCGAAGAAGCTCTGGAGATCGCAGATACGCT 15125 Query 65677 CGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCG 65736 | || ||| || | | | | | || || | || |||||| || || ||||| || Sbjct 15124 CATCCGGTCGGGAGCGGTAGACCTTGTGGTGCTGGATAGTGTGGCTGCGCTTGTGCCACG 15065 Query 65737 CGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTC 65796 || ||||| || ||||| || || ||| || ||| ||||| ||||| |||||| Sbjct 15064 TGCAGAGCTTGAGGGCGAGATGGGAGACCAGCAGATCGCGCTGCAGGCGCGACTCATGAG 15005 Query 65797 GCAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTG 65853 ||||| | ||||||||||| ||| | | |||| | || ||| | | ||| Sbjct 15004 CCAGGCGCTTCGCAAGCTCACGGGCTCGCTGTCCAAGTCGAACTGCACCATTA---TCTT 14948 Query 65854 GGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCAC 65913 |||||||| | || ||||| | |||| | | || || | ||| || | Sbjct 14947 CCTCAACCAGATCCGACAGAAGGTGGGCATCAT---CTTTGGATCTCCCGAAGTTACGTC 14891 Query 65914 GGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCAC 65973 |||||||| ||| ||| | | |||||||||||| || |||| |||| |||| | | Sbjct 14890 GGGCGGCACGGCGTTGCGCTACTACGCCTCAGTGCGGCTGGACATCCGCCGCAAAACGGC 14831 Query 65974 CGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAA 66033 ||||| ||||| | || ||||| || || ||| || || | ||||||||| Sbjct 14830 AATTAAGGAGGGCGACGTGGTCGTCGGTAATGAGACGACGGTCAAAGTTGCCAAGAACAA 14771 Query 66034 GCTGGCCCCGCC 66045 ||||||| |||| Sbjct 14770 GCTGGCCTCGCC 14759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238113586346752