Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq32285 114 1e-20 seq30472 111 1e-19 >seq32285 Length=18199 Score = 114 bits (126), Expect = 1e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 24988 AAAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAG 25047 ||||| || ||||| || || || ||||||||||| || || | ||||| | || | Sbjct 8587 AAAACAACACCATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACGCTAGATG 8528 Query 25048 TGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTC 25107 ||||| |||| ||| | ||||| ||||||| |||||| ||||| || || || | Sbjct 8527 TGGAGCCGTCGGACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCC 8468 Query 25108 CACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGG 25167 | |||||||| ||||| | || || |||||||| || | || || | ||||| || Sbjct 8467 CGCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGCACGCTGA 8408 Query 25168 GCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| ||||| || || || || || || || || | ||||| Sbjct 8407 GCGACTACAACATCCAGAAGGAGTCTACACTGCACCTGGTGCT 8365 >seq30472 Length=20972 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || | ||||| |||| |||||| | || Sbjct 11993 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCTTCG 11934 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| | ||||| || || ||||| |||||| ||||| ||||| || |||||||||| Sbjct 11933 GACTCGATCGA--CAATGTCAAGCAGAAAATCCAAGACAAGGAAGGCATCCCACCTGACC 11876 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || || |||||||| || | || || | ||| || | |||| |||| Sbjct 11875 AGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGCTAAGCGACTACA 11816 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || || || ||| | || || ||||| Sbjct 11815 ACATCCAGAAGGAGTCAACGTTGCACTTGGTGCT 11782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433132976400320