Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq36228 143 2e-29 >seq36228 Length=63081 Score = 143 bits (158), Expect = 2e-29 Identities = 369/553 (67%), Gaps = 13/553 (2%) Strand=Plus/Minus Query 20276 TAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGA 20335 |||||||||||||| || || ||||| | |||||||| |||||| ||| |||| ||| Sbjct 48469 TAGCTGGCAATGTTGAAGGGCACTCCGAGCCCCATGTCGGCCGACCGCTGGTACATCTGG 48410 Query 20336 CAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCC 20395 || || ||||| ||||| || ||||| ||||| || |||| ||| || ||||| |||||| Sbjct 48409 CACGACAGCTCCCCGTCGGCCACATAGAATTGGCAGAACATGTGGCACGGCGGCAGCGCC 48350 Query 20396 ATCAACGACAAG-TCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATT 20454 ||| || || || |||||||||||||| ||| | || | | || ||| || Sbjct 48349 ATCT-CGCTTAGATCGGCCGGGTTCCACGCCGACAGCACAATGCGGCGGTCCGTCGGGTT 48291 Query 20455 ATTTTTTATTAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGC 20514 || | | | | | | | ||||| | |||||||| || ||||| || Sbjct 48290 GGTTCGAAGCTTGTGGATCACCTCAGCGAGCTGGTCCACGCCCTGGCCGGTGTAGTCCGC 48231 Query 20515 ATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAA 20574 | | |||| |||| || |||||||| | ||||||||| ||||| || ||||| | Sbjct 48230 GTGCATGTCCTTGTACTTGGCGCCAAAGTGGCGCCACTGGAAGCCGTATACCGGTCCAAG 48171 Query 20575 ATCCCCCTCCCTTCTGTGCG---CCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATT 20631 ||| || | |||| | ||| ||| || || | |||| |||||| || ||||| Sbjct 48170 ATCGCC--CACTTC-GCGCGACTGCAGCCCTCGAGTGTCCAGATACTCCCGAGATCCATT 48114 Query 20632 TTTGTCCCATATCTTGA-CTCCTGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCA 20690 |||||| || | || |||| | || ||| || | || || | | Sbjct 48113 GCCGTCCCAAATGTGGATGTCCTTCTGCTG-CAGCGTGTGGGCGCTCGTGTCGCCGCTGA 48055 Query 20691 GAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAA-G 20749 ||||| |||||||| | | || || ||||| || |||| ||| || || || | | Sbjct 48054 TGAACCACAGCAGCTCCTCGGCCACACCGCGCCAGAAGACCCTCTTGGTCGTCAGCARCG 47995 Query 20750 GGA--AAGTGGTCCCGCAGACTATACCTGGCCTGCATGCCAAATAGAGAGAGGGTGCCTA 20807 ||| | || ||||| ||||| ||| |||| ||| || | || || |||||| Sbjct 47994 GGAACACGTTGTCCCTGAGACTGAACCGCATCTGCGCGCCGAAGATCGACAGCGTGCCTG 47935 Query 20808 TGCCGGTGCGGTC 20820 |||| || ||||| Sbjct 47934 TGCCTGTSCGGTC 47922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441169062315520