Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq32285 93.3 3e-14 >seq32285 Length=18199 Score = 93.3 bits (102), Expect = 3e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || || || ||||||||| |||||||| || || Sbjct 8350 CCGCCACGCAGACGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTC-GCT 8408 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || ||| |||| |||| ||||||||||| || ||||| |||||||| || ||| Sbjct 8409 CAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 8468 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| ||||| ||||| ||||| Sbjct 8469 GATGCCCTCCTTGTCTTGGATTTTCTGCTT 8498 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || || || ||||||||| |||||||| || || Sbjct 7666 CCGCCACGCAGACGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTC-GCT 7724 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || | || |||| ||||||||||| || ||||| |||||||| || ||| Sbjct 7725 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 7784 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| ||||| ||||| ||||| Sbjct 7785 GATGCCCTCCTTGTCTTGGATTTTCTGCTT 7814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396883698096256