Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq32285 136 9e-27 seq30472 131 4e-25 seq35386 114 3e-20 seq12976 114 3e-20 seq22780 98.7 2e-15 seq17832 98.7 2e-15 >seq32285 Length=18199 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| |||||||| ||||| || | || || || |||||| Sbjct 8386 TCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAG 8445 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | ||||| || || || || ||||||||| |||||||| Sbjct 8446 ATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGGATTTTCTGCTTCACGTTG 8505 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || || || || || |||||||||||||| || |||| |||||| ||| Sbjct 8506 TCGATCGAGTCCGACGGCTCCACATCTAGCGTGATCGTCTTGCCCGTCAAAGTCTTCACG 8565 Query 288463 AATATCTGCATTATGTTATT 288482 || |||||||| |||| || Sbjct 8566 AAGATCTGCATGGTGTTGTT 8585 >seq30472 Length=20972 Score = 131 bits (144), Expect = 4e-25 Identities = 169/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || || | || | ||| || || ||||| || |||| Sbjct 11991 CATG-CCACCGCGCAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGT 12049 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || ||||| || ||||| || | || || || ||||||||||||||||| || | Sbjct 12050 CGCTTAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAG 12109 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||||||||| || || ||||||||| || ||||| || || || || | | Sbjct 12110 GCGGGATTCCTTCCTTGTCTTGGATTTTCTGCTTGACGTTGTCGATCGAGTCCGAAGGCT 12169 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || |||||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 12170 CCACGTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAAATCTGCAT 12221 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| ||||| || ||||| || | || || || |||||| Sbjct 11803 TCCTTCTGGATGTTGTAGTCGCTTAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAG 11862 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | |||||| ||||| || || ||||||||| || || || Sbjct 11863 ATCAGACGCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTGACATTG 11922 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || | || || ||||||||||||||||| || ||||| ||||| ||| Sbjct 11923 TCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACG 11982 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 11983 AAGATCTGCAT 11993 Score = 127 bits (140), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || || | || | ||| || || ||||| || |||| Sbjct 12219 CATG-CCACCGCGCAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGT 12277 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || ||||| || ||||| || | || || || ||||| ||||||||||| || | Sbjct 12278 CGCTCAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCAG 12337 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| ||||| ||||| ||||||||| || || || || || || || | | Sbjct 12338 GCGGGATGCCTTCCTTATCTTGGATTTTCTGCTTGACATTATCGATCGAGTCCGAAGGCT 12397 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||||||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 12398 CCACGTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 12449 >seq35386 Length=12911 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | ||||||||| ||||| || | || || || ||||||||| Sbjct 4745 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 4686 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| || | ||||| ||||| || |||||||||||| || || || || Sbjct 4685 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 4626 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || || || || || ||||||||||| ||||| || ||||| || || || || Sbjct 4625 ATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACAAAG 4566 Query 288466 ATCTGCATTAT 288476 |||||||| || Sbjct 4565 ATCTGCATGAT 4555 >seq12976 Length=6227 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | ||||||||| ||||| || | || || || ||||||||| Sbjct 3688 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 3629 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| || | ||||| ||||| || |||||||||||| || || || || Sbjct 3628 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 3569 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || || || || || ||||||||||| ||||| || ||||| || || || || Sbjct 3568 ATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACAAAG 3509 Query 288466 ATCTGCATTAT 288476 |||||||| || Sbjct 3508 ATCTGCATGAT 3498 >seq22780 Length=3860 Score = 98.7 bits (108), Expect = 2e-15 Identities = 263/397 (66%), Gaps = 14/397 (4%) Strand=Plus/Minus Query 325123 GATGTCTTTAGGGTTGTAACTGGGAATGTTCGTCGACCATCCGGTTCCGATACCACTCGA 325182 |||||| ||||||||| |||||| | | ||||| || ||||||||||| || Sbjct 2118 GATGTCGAGAGGGTTGTAGTTGGGAACGGAGCTGGACCAACCCGTTCCGATACCG-TCAC 2060 Query 325183 T-CCATTCACCAGGATACTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTATCGC 325241 | |||||||| || | | || |||| || | || |||| || || ||| | || Sbjct 2059 TGCCATTCACGAGCACCATGGGGATAATCGGGATGTACCACTCGGGCTCAATCGACTGGC 2000 Query 325242 CGTCGTCGTACATATATTTCAGAAGATTGTCGTCC---GTATCGACGAAAACCTGTCGAG 325298 | || |||| || ||| || || | | || |||| | |||| || ||||| Sbjct 1999 CATCTTCGTCCAGATACTTGAGCACGTCGTTGTCCAGCGGATCGTAGA------GTCGAC 1946 Query 325299 TC-TGAG--GGTTCAGTTTCatatatatatatCGTGCACTCGCGTGATCCTTACCACCCT 325355 | |||| | | ||| || | | || || || || || || ||||||||||||| Sbjct 1945 GCGTGAGCTGCTCCAGGTTGGTGAAAATGTAACGAGCGCTGGCCGCATCCTTACCACCCA 1886 Query 325356 GCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACAT 325415 || | || ||||||||| || ||| ||| | || |||||| ||||||||||| Sbjct 1885 TCAGGCGCGTACCGAACTGACCGATCGGGGACAGCAGGTGGATGTTGTTGCTTCCGACGA 1826 Query 325416 AATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGC 325475 | ||||| || | |||||||| || |||| | || ||||| || || || || Sbjct 1825 AGTCCTGCGCCATATTCACGATACAGCCCTGCAAACTCGCCTCGCCGTGATGGTAAGCCG 1766 Query 325476 TATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTT 325512 |||||| | ||||| || | |||||| ||||| Sbjct 1765 AATGCTCAGACACGTAGCCTGCAAGCTGTGCCACCTT 1729 >seq17832 Length=15358 Score = 98.7 bits (108), Expect = 2e-15 Identities = 263/397 (66%), Gaps = 14/397 (4%) Strand=Plus/Plus Query 325123 GATGTCTTTAGGGTTGTAACTGGGAATGTTCGTCGACCATCCGGTTCCGATACCACTCGA 325182 |||||| ||||||||| |||||| | | ||||| || ||||||||||| || Sbjct 13365 GATGTCGAGAGGGTTGTAGTTGGGAACGGAGCTGGACCAACCCGTTCCGATACCG-TCAC 13423 Query 325183 T-CCATTCACCAGGATACTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTATCGC 325241 | |||||||| || | | || |||| || | || |||| || || ||| | || Sbjct 13424 TGCCATTCACGAGCACCATGGGGATAATCGGGATGTACCACTCGGGCTCAATCGACTGGC 13483 Query 325242 CGTCGTCGTACATATATTTCAGAAGATTGTCGTCC---GTATCGACGAAAACCTGTCGAG 325298 | || |||| || ||| || || | | || |||| | |||| || ||||| Sbjct 13484 CATCTTCGTCCAGATACTTGAGCACGTCGTTGTCCAGCGGATCGTAGA------GTCGAC 13537 Query 325299 TC-TGAG--GGTTCAGTTTCatatatatatatCGTGCACTCGCGTGATCCTTACCACCCT 325355 | |||| | | ||| || | | || || || || || || ||||||||||||| Sbjct 13538 GCGTGAGCTGCTCCAGGTTGGTGAAAATGTAACGAGCGCTGGCCGCATCCTTACCACCCA 13597 Query 325356 GCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACAT 325415 || | || ||||||||| || ||| ||| | || |||||| ||||||||||| Sbjct 13598 TCAGGCGCGTACCGAACTGACCGATCGGGGACAGCAGGTGGATGTTGTTGCTTCCGACGA 13657 Query 325416 AATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGC 325475 | ||||| || | |||||||| || |||| | || ||||| || || || || Sbjct 13658 AGTCCTGCGCCATATTCACGATACAGCCCTGCAAACTCGCCTCGCCGTGATGGTAAGCCG 13717 Query 325476 TATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTT 325512 |||||| | ||||| || | |||||| ||||| Sbjct 13718 AATGCTCAGACACGTAGCCTGCAAGCTGTGCCACCTT 13754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179096258317184