Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq30005 118 2e-21 seq22780 93.3 9e-14 seq17832 93.3 9e-14 >seq30005 Length=11534 Score = 118 bits (130), Expect = 2e-21 Identities = 443/689 (64%), Gaps = 17/689 (2%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| ||||| || ||||||| ||||| |||||||||| ||| ||| || Sbjct 1127 CTCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCCAG 1186 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||| |||||||||||||| ||||| || |||||||| | |||||| || || Sbjct 1187 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCGACGTAAGCGAAACGCATGGAAGGGTG 1246 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 ||||||||| || |||| |||| | ||||| |||| ||| || || || Sbjct 1247 CTTCCAAACCTGGCCAGACGTGGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGA 1306 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCATT 333553 || || ||||| || ||| | ||| | || | | ||| | | || Sbjct 1307 CTTGCCGGCACCGTTGGGGCCGAGCACGGCGATACGGCTCGACAGAGCGCACGTCACAGA 1366 Query 333554 CACGTTGTCAAAGATT---AGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGT-A 333609 | ||||| |||| | || ||| || || |||| | | | || || | Sbjct 1367 GATGTTGT---TGATTGACGGCTTGGGCGTGCCAGGGTACTGGTA-CGAGCAGTTTGTCA 1422 Query 333610 GCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACT 333669 | ||||||| | |||| |||| | | ||||| || ||||| |||||| Sbjct 1423 GACGAATGATGGGCTTGCCCTTGTTCTTGATGTCGGCAAGGAAACCAGGCTCCGGGAACG 1482 Query 333670 TCCACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCT 333726 | || | | | | || |||| || ||||||| | | ||||| || || Sbjct 1483 TGAACTTGACGTTGTCCGACTCG---AGTTCGTAGTAGGCCTTCGCCTCGGGCTTCTGCT 1539 Query 333727 TCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGA 333786 ||||| | ||||| || |||||||| |||| ||||| || | ||||| |||| Sbjct 1540 CTACGAAAGCAGACAGGTTGCCCTTGTAGATCTTGAGCTTGCGG---GTCTCGTAGTGGA 1596 Query 333787 TAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAA 333846 | || ||| || | ||| ||||| || |||||||| ||||| || | ||| | Sbjct 1597 TGATGTTGGTACAGCACGTGTCCAGGAAGCCAGAGTCGTGGGACACCATGATCGACGTCA 1656 Query 333847 CGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGT 333906 ||| | ||| | ||||||| | ||||||| ||||| |||| | |||| Sbjct 1657 CGTTGGTGAGGCTCGTCAGGTAGTTCTCCAGCCACGCGACGTTGTGCACATCCAAGTGGT 1716 Query 333907 TGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGA 333966 | || ||||| ||||| || || | | || ||| | ||||| ||||| || || | | Sbjct 1717 TCGTGGGCTCATCAAGCAGCAGGATGTCGGCCTTCTGCAGCATGGCACGGGCCAGCTCCA 1776 Query 333967 GTTTCATTTTCCACCCTCCTGAAAGAGTG 333995 ||||||| ||||| || || ||||| ||| Sbjct 1777 GTTTCATCTTCCAACCACCCGAAAGCGTG 1805 Score = 87.8 bits (96), Expect = 4e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || || ||||| ||||| || ||||||||||| || || || || || Sbjct 1985 GGGGAAGCCCTCGAGCTGGCCGTTGGAGATGGCGCGCATCAGCGTCGACTTGCCACATCC 2044 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || || ||||||||||| |||| |||||||| || | || | |||||||| Sbjct 2045 GTTGGGGCCGCACAGACCGTAACGGTGGCCACGCTTGAGGCGAAGACGGGCGTTGTTCAG 2104 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACA 334336 ||||| | ||||| || || || || || ||||| Sbjct 2105 CAGAATCATACCACCGTAGGCGAGCGAGAACTCACA 2140 >seq22780 Length=3860 Score = 93.3 bits (102), Expect = 9e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 297430 CAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACC 297489 ||| || |||||||| || || || || || ||||||||||||| || | || ||| Sbjct 1932 CAGGTTGGTGAAAATGTAACGAGCGCTGGCCGCATCCTTACCACCCATCAGGCGCGTACC 1873 Query 297490 GAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAG 297549 |||||| || ||| ||| | || |||||| ||||||||||| | ||||| || | Sbjct 1872 GAACTGACCGATCGGGGACAGCAGGTGGATGTTGTTGCTTCCGACGAAGTCCTGCGCCAT 1813 Query 297550 GTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAAC 297609 |||||||| || |||| | || ||||| || || || || |||||| | || Sbjct 1812 ATTCACGATACAGCCCTGCAAACTCGCCTCGCCGTGATGGTAAGCCGAATGCTCAGACAC 1753 Query 297610 GTAACCGCTGAACTGTGCAACCTT 297633 ||| || | |||||| ||||| Sbjct 1752 GTAGCCTGCAAGCTGTGCCACCTT 1729 >seq17832 Length=15358 Score = 93.3 bits (102), Expect = 9e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 297430 CAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACC 297489 ||| || |||||||| || || || || || ||||||||||||| || | || ||| Sbjct 13551 CAGGTTGGTGAAAATGTAACGAGCGCTGGCCGCATCCTTACCACCCATCAGGCGCGTACC 13610 Query 297490 GAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAG 297549 |||||| || ||| ||| | || |||||| ||||||||||| | ||||| || | Sbjct 13611 GAACTGACCGATCGGGGACAGCAGGTGGATGTTGTTGCTTCCGACGAAGTCCTGCGCCAT 13670 Query 297550 GTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAAC 297609 |||||||| || |||| | || ||||| || || || || |||||| | || Sbjct 13671 ATTCACGATACAGCCCTGCAAACTCGCCTCGCCGTGATGGTAAGCCGAATGCTCAGACAC 13730 Query 297610 GTAACCGCTGAACTGTGCAACCTT 297633 ||| || | |||||| ||||| Sbjct 13731 GTAGCCTGCAAGCTGTGCCACCTT 13754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102358183356800