Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq36271 450 1e-121 >seq36271 Length=16985 Score = 450 bits (498), Expect = 1e-121 Identities = 1124/1693 (66%), Gaps = 44/1693 (3%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || || || || ||||||||||| || || ||| || ||| | || || || ||||| Sbjct 2758 GCGACGCCCACGCTGTTCAACGCCGGCACGCCGCGTCCTCAGCTCTCGTCCTGCTTCCTC 2699 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||| |||||| || || |||| ||||| || ||| | |||||| Sbjct 2698 CTGGCCATGCAGGACGACTCGATTGAGGGCATTTACGACACACTGAAGCAGTGTGCGTGT 2639 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | ||||| || || || |||||| | ||| | | ||||| | | | Sbjct 2638 ATCTCCAAGTGGGCGGGCGGGATTGGCATCAGTATGCACAATATCCGTGCGACGAACAGC 2579 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| ||||| || |||||| ||||||||||| || |||| ||||| || || || ||| Sbjct 2578 TACATTCGCGGCACGAATGGCTCCTCCAACGGCATCATCCCCATGCTGCGTGTGTTTAAC 2519 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || |||| || |||||||||||||| || || | | | ||||| || ||||| |||| Sbjct 2518 GACACGGCACGATACGTGGACCAGGGCGGCGGCAAGCGCAAGGGATCGTTCGCCATCTAC 2459 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || |||||||||||||| |||||| | ||| | |||||||| ||||||||||||||| Sbjct 2458 CTGGAGCCCTGGCACGCCGACGTGTTCGAGTTCCTGGACCTGCGGAAGAACCACGGCAAC 2399 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || ||| | | || | ||||| |||||||| ||||||||||| || || || ||||| Sbjct 2398 GAGCTGCACCGCGCGCGCGACCTGTTCTACGCGCTCTGGGTGCCGGATCTCTTCATGAAG 2339 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 |||||||| | || | ||||| || || || ||||| || ||||| || | | Sbjct 2338 CGCGTCGAAGCAGACGGCCAGTGGAGCCTCTTCTGCCCCAACGAGGCGCCCGGGCTCTAC 2279 Query 94372 GA-CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGC 94430 || | | | | || | || || | | |||| | ||||| | |||| || Sbjct 2278 GAGTGCTGGGGCGACGAG-TTCGAGGCCCTGTACGAAAAGTACGAGAAGGAGGGACGCGC 2220 Query 94431 CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGAC 94490 | ||| || | || | |||||||| ||| |||||| ||| | ||||| Sbjct 2219 TCGCAAGACGATCAAAGCGCAGCAGCTGTGGTTCTCCATCCTGGACGCCCAGATTGAGAC 2160 Query 94491 GGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCT 94550 ||| ||| | ||| ||||||||||||| | |||| |||||| ||||||||| |||| Sbjct 2159 GGGCGTGCCGTTCATGCTGTTCAAGGACTCGGCCAACCGCAAGTCGAACCAGCAGAACCT 2100 Query 94551 CGGGGTGATCAAGAGCTCG---AATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 || |||| ||||| || ||||| ||| | | ||||| | || || || Sbjct 2099 GGGCACGATC---CGCTCGAGCAACTTGTGCTGTGAGGTCATGGAGTACTCGTCGCCTGA 2043 Query 94608 CGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTA 94667 |||| | || ||||| ||||||| ||| | ||| ||| |||||| ||| | | Sbjct 2042 CGAGGTGGCCGTGTGCAACCTGGCGTCCGTGGCGCTGCCCAAGTTCGTGGAAGAGGGC-- 1985 Query 94668 CACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGT--- 94724 ||| | | || | | | ||| | ||| |||| ||||| |||| Sbjct 1984 GGCGTGTTCAACTAC-CACAAGCTGTACGAG---GTGA--------CGAAGG-TGGTGAC 1938 Query 94725 CTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTC 94784 | |||||||||| ||| || ||| |||| ||||||||| |||||||| | || Sbjct 1937 CCGCAACCTGAACAAGGTCATTGACGTCAACTACTACCCCGTGGCGGAGGCGCGCACGTC 1878 Query 94785 AAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGAT 94844 ||| || || || ||| |||| |||||||| |||||| |||| |||||| | | | Sbjct 1877 CAACATGCGCCACCGCCCCGTCGGTATCGGCGTTCAGGGTCTCGCCGACGCGTTCATCCT 1818 Query 94845 GATGCGTCTGC-CCTACGA-CTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAA 94902 ||| | || | | | ||| | | | | ||| | | || ||| || || || Sbjct 1817 CATG-GACTACGCGTTCGAGAGCCCGCAAGCCCGCGAG-CTCAACAAGAAGATCTTTGAG 1760 Query 94903 AGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCA 94962 | |||||| |||| ||||| | || | | | |||| ||| || || Sbjct 1759 ACCATTTACTACGCTTCCATGGAGACGTCGATGGAGATCGCCA---AGGAGCTGGGCCCG 1703 Query 94963 CACGAATCGTTCCGCGGATCGCCCTTGGAAC-AGGGCATTTTTCAGTTCGACCTCTGGGG 95021 |||| |||||| || || ||| | | ||||||| || ||||||||| | ||||| Sbjct 1702 TACGAGACGTTCCAGGGCTC-TCCTGCCAGCAAGGGCATCTTCCAGTTCGACATGTGGGG 1644 Query 95022 TGTGAAGCC---CTCGGGTCTGTACGACTGGG--AAGCTCTACGCGCTG-ATGTTATCAA 95075 || | || ||||| |||| ||||||| | |||| | || | | || || || Sbjct 1643 CGTCACCCCTGATTCGGGGCTGTGGGACTGGGCCACGCTCAA---GCAGAACGTGATTAA 1587 Query 95076 ACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGAT 95135 ||||| | ||| ||||||| || || || ||||| |||||||| ||||| || || Sbjct 1586 GCACGGCATCCGCAACTCGCTGCTCGTCGCGCCGATGCCGACGGCCTCGACGGCTCAAAT 1527 Query 95136 CCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCT 95195 ||| || ||||||||||| |||| || | ||| |||||| |||||||| | || ||||| Sbjct 1526 CCTGGGTAACAACGAGTCCATCGAGCCGTACACGTCCAACATGTACAACCGCCGCGTGCT 1467 Query 95196 CGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGT 95255 || || || ||| || | | |||||| |||| | |||| |||| ||||| | Sbjct 1466 TGCGGGCGAGTTCACCATTGTGAACAAGTACCTGATGAGGGAGCTGATTGAGCTGGGCAT 1407 Query 95256 GTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCC 95315 ||| |||| ||||| | || || |||||| || ||||| || Sbjct 1406 CTGGACCCCGGAGGTGCGCAACCAGATCCTGAACGATGGCGGCTCGGTGCAGAAGGTCAA 1347 Query 95316 GCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGT 95375 | || ||||| | ||||||| |||||||| |||||||||||| |||| Sbjct 1346 GATCATTCCGGACAAAATCAAGGACAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGAC 1287 Query 95376 GATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNN 95435 | | | |||| | |||||| |||||| ||| ||| |||||||| Sbjct 1286 GGTGTTGGACCTCTCGGCCGACCGCGGCGCCTACATTTGCCAGAGCCAGTCGCTCAACAT 1227 Query 95436 NNNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAA 95495 || ||||| || | | | || | || |||||| ||||||| |||| ||| Sbjct 1226 CCACATCGCCGACCCGACCATCAGCAAGCTCACATCCATGCACTTCTACGCCTGGAAAAA 1167 Query 95496 GGGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATACAGTT 95555 ||| |||||||| || ||||| || |||| | || || || ||| |||| ||||| Sbjct 1166 GGGGCTCAAGACGGGCATGTACTACATGCGCGGACGCCCGAAAGCCGACGCCATCCAGTT 1107 Query 95556 CGCCCTAGAAAAG 95568 | || | || ||| Sbjct 1106 CACCGTGGACAAG 1094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494494835770880