Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq36395 105 5e-18 seq32834 100 2e-16 >seq36395 Length=57575 Score = 105 bits (116), Expect = 5e-18 Identities = 172/246 (70%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 108336 CGTAGCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAA 108395 ||| ||||| | || | |||||||||| || ||| | ||| | ||| | |||||| Sbjct 5395 CGTGGCCGGCCTGGGCATCACGGCCGGCGCGCACCGGCTCTGGTCGCACCGCGGCTACAA 5454 Query 108396 GGCCA--CCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAAC 108453 ||||| | ||||| | | |||||||| ||| ||| ||| || | || | Sbjct 5455 GGCCAAGCTGCCCC--TGCGCGTGTTCCTCATGCTGTGCAACTCCATGTCCTTCGAGGGC 5512 Query 108454 ACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCC 108513 |||||| ||||| || ||| ||| | || ||||||||| ||| |||||||||||| Sbjct 5513 ACCATCTTCGAGTGGTCGCGCGACCACCGTGTGCACCACAAGGGCTCGGACACGACGGCC 5572 Query 108514 GACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACC 108573 ||||| |||||| | | | || ||| ||||||||| |||| ||| ||||| || | Sbjct 5573 GACCCGCACAACTCGGAGCGCGGCCTCTTCTTCTCGCACATGGGCTGGATCATGGTGCGC 5632 Query 108574 AAGGAC 108579 ||| || Sbjct 5633 AAGCAC 5638 >seq32834 Length=21492 Score = 100 bits (110), Expect = 2e-16 Identities = 114/152 (75%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 108453 CACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGC 108512 ||||||| || ||| | ||| ||| | || |||||||||||||| ||||||| || Sbjct 3653 CACCATCTTCCACTGGAGCCGCGACCACCGCGTGCACCACAAGTACTCGGACACGAGCGC 3594 Query 108513 CGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGAC 108572 ||||||||||||| | ||| || |||| ||| ||||| |||| ||| | ||| | | Sbjct 3593 CGACCCACACAACTCGGGCAGCGGCTTCTTCTTCGCGCACATGGGCTGGTTGATGGTCAA 3534 Query 108573 CAAGGACCCCGACGTGATCTCGGCCGGTCGAA 108604 ||||||||| | |||||| ||| || |||| Sbjct 3533 GAAGGACCCCAAGGTGATCAAGGCTGG-CGAA 3503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381600979333632