Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq30472 145 7e-30 seq32285 134 1e-26 seq35386 107 2e-18 seq12976 107 2e-18 seq32329 98.7 9e-16 seq27878 98.7 9e-16 seq27877 98.7 9e-16 seq26115 98.7 9e-16 seq36271 86.0 6e-12 >seq30472 Length=20972 Score = 145 bits (160), Expect = 7e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| |||||| || | ||| ||||| || || || ||||| |||| Sbjct 11995 CCACCGCGCAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTT 12054 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| ||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 12055 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 12114 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || |||||||| |||||||||||||| |||| |||| | ||||| | ||| || Sbjct 12115 ATTCCTTCCTTGTCTTGGATTTTCTGCTTGACGTTG-TCGATCGAGTCCGAAGGCTCCAC 12173 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| ||||| ||||| || || || |||||||||||| Sbjct 12174 GTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAAATCTGCATG 12222 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| |||||| || | ||| ||||| || || || ||||| |||| | Sbjct 12223 CCACCGCGCAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTC 12282 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| ||| || || ||||| || || ||| | |||| |||||||| || || || Sbjct 12283 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGCGGG 12342 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||| || |||||||||||||| | |||| | ||||| | ||| || Sbjct 12343 ATGCCTTCCTTATCTTGGATTTTCTGCTTGACATTATCGATCGAGTCCGAAGGCTCCACG 12402 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||| ||||| || || || || |||||||| Sbjct 12403 TCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 12449 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | |||| |||||| || | ||| ||||| || || || ||||| |||| Sbjct 11766 TCCGCCACGAAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCT 11825 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||| ||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 11826 TAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGTGG 11885 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| |||||||| |||||||||||||| | |||| | ||||| | ||| || Sbjct 11886 GATGCCTTCCTTGTCTTGGATTTTCTGCTTGACATTGTCGATCGAGTCCGAAGGCTCCAC 11945 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | ||| ||||| ||||| || || || || ||||||||| Sbjct 11946 GTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 11994 >seq32285 Length=18199 Score = 134 bits (148), Expect = 1e-26 Identities = 162/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | |||||||| || || || ||||| |||| || |||||| Sbjct 8362 CGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGCCCG 8421 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||||| |||||||| || || || |||||||||||| Sbjct 8422 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTG 8481 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 || |||||||||||| | |||| |||| | ||||| ||| || || | || | Sbjct 8482 TCTTGGATTTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCACATCTAGCGTGAT 8540 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 ||| ||||| |||| ||| || || || |||||||||| Sbjct 8541 CGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATGG 8578 Score = 111 bits (122), Expect = 1e-19 Identities = 121/158 (77%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | |||||||| || || || ||||| |||| || |||||| | Sbjct 7678 CGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCA 7737 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||||| |||||||| || || || |||||||||||| Sbjct 7738 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTG 7797 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCG 127055 || |||||||||||| | |||| |||| | ||||| Sbjct 7798 TCTTGGATTTTCTGCTTCACGTTG-TCGATCGAGTCCG 7834 >seq35386 Length=12911 Score = 107 bits (118), Expect = 2e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || | |||||| || || ||||| || || ||| ||||| Sbjct 4745 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 4686 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||| ||||||||| |||||||||||||| | || Sbjct 4685 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 4626 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||||| ||| || |||| || | || || || ||||| ||||| ||||| Sbjct 4625 ATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACAAAG 4566 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 4565 ATCTGCATG 4557 >seq12976 Length=6227 Score = 107 bits (118), Expect = 2e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || | |||||| || || ||||| || || ||| ||||| Sbjct 3688 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 3629 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||| ||||||||| |||||||||||||| | || Sbjct 3628 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 3569 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||||| ||| || |||| || | || || || ||||| ||||| ||||| Sbjct 3568 ATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACAAAG 3509 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 3508 ATCTGCATG 3500 >seq32329 Length=12294 Score = 98.7 bits (108), Expect = 9e-16 Identities = 126/172 (73%), Gaps = 10/172 (6%) Strand=Plus/Plus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCT---- 47467 || |||||| || | | ||| | |||||||||| ||||| || ||||| ||||| Sbjct 11562 GGCATGAACTCGACGCTCATGTGCCAGTACATCGAGTTTGTGGCGGACCGTCTGCTGTAC 11621 Query 47468 -CGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACA 47526 |||| || || ||| ||||| ||| || | |||| || ||||| | ||| ||| Sbjct 11622 TCGTTGGGC----GTGTCC-AAGATCTACAACGTCAAGAACCCGTTCGACTGGATGGACA 11676 Query 47527 ACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 || ||||| ||||||||||||| || |||||||||||||| ||||| || Sbjct 11677 TGATCTCGCTGCAGGGCAAGACCAATTTCTTCGAGAAGCGCGTGGGCGAGTA 11728 >seq27878 Length=10574 Score = 98.7 bits (108), Expect = 9e-16 Identities = 126/172 (73%), Gaps = 10/172 (6%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCT---- 47467 || |||||| || | | ||| | |||||||||| ||||| || ||||| ||||| Sbjct 733 GGCATGAACTCGACGCTCATGTGCCAGTACATCGAGTTTGTGGCGGACCGTCTGCTGTAC 674 Query 47468 -CGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACA 47526 |||| || || ||| ||||| ||| || | |||| || ||||| | ||| ||| Sbjct 673 TCGTTGGGC----GTGTCC-AAGATCTACAACGTCAAGAACCCGTTCGACTGGATGGACA 619 Query 47527 ACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 || ||||| ||||||||||||| || |||||||||||||| ||||| || Sbjct 618 TGATCTCGCTGCAGGGCAAGACCAATTTCTTCGAGAAGCGCGTGGGCGAGTA 567 >seq27877 Length=1900 Score = 98.7 bits (108), Expect = 9e-16 Identities = 126/172 (73%), Gaps = 10/172 (6%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCT---- 47467 || |||||| || | | ||| | |||||||||| ||||| || ||||| ||||| Sbjct 733 GGCATGAACTCGACGCTCATGTGCCAGTACATCGAGTTTGTGGCGGACCGTCTGCTGTAC 674 Query 47468 -CGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACA 47526 |||| || || ||| ||||| ||| || | |||| || ||||| | ||| ||| Sbjct 673 TCGTTGGGC----GTGTCC-AAGATCTACAACGTCAAGAACCCGTTCGACTGGATGGACA 619 Query 47527 ACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 || ||||| ||||||||||||| || |||||||||||||| ||||| || Sbjct 618 TGATCTCGCTGCAGGGCAAGACCAATTTCTTCGAGAAGCGCGTGGGCGAGTA 567 >seq26115 Length=10575 Score = 98.7 bits (108), Expect = 9e-16 Identities = 126/172 (73%), Gaps = 10/172 (6%) Strand=Plus/Plus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCT---- 47467 || |||||| || | | ||| | |||||||||| ||||| || ||||| ||||| Sbjct 9843 GGCATGAACTCGACGCTCATGTGCCAGTACATCGAGTTTGTGGCGGACCGTCTGCTGTAC 9902 Query 47468 -CGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACA 47526 |||| || || ||| ||||| ||| || | |||| || ||||| | ||| ||| Sbjct 9903 TCGTTGGGC----GTGTCC-AAGATCTACAACGTCAAGAACCCGTTCGACTGGATGGACA 9957 Query 47527 ACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 || ||||| ||||||||||||| || |||||||||||||| ||||| || Sbjct 9958 TGATCTCGCTGCAGGGCAAGACCAATTTCTTCGAGAAGCGCGTGGGCGAGTA 10009 >seq36271 Length=16985 Score = 86.0 bits (94), Expect = 6e-12 Identities = 317/493 (64%), Gaps = 8/493 (2%) Strand=Plus/Plus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778 ||| ||||||||||| | || | || ||| | ||||| ||||||||||| || Sbjct 1097 GTCCACGGTGAACTGGATGGCGTCGGCTTTCGGGCGTCCGCGCATGTAGTACATGCCCGT 1156 Query 145779 CTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACATGACCGAGTACGTGG---G 145835 ||||||| || | ||| | ||| ||||| ||| || ||| | | ||| | Sbjct 1157 CTTGAGCCCCTTTTTCCAGGCGTAGAAGTGCATG---GATGTGAGCTTGCTGATGGTCGG 1213 Query 145836 TTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCC-CGGTCGGCGG 145894 ||||||| | || || || |||||||| |||| | || ||| |||||||| | Sbjct 1214 GTCGGCGATGTGGATGTTGAGCGACTGGCTCTGGCAAATGTA-GGCGCCGCGGTCGGCCG 1272 Query 145895 CCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGT 145954 | ||| | || ||| || || ||||| | || || | ||||||| | Sbjct 1273 AGAGGTCCAACACCGTCTTCTGCTTGATCTCCCACACCGTCTTGTACTTGTCCTTGATTT 1332 Query 145955 GCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCA 146014 | || || | | |||||||| || || ||| || || | |||||||| Sbjct 1333 TGTCCGGAATGATCTTGACCTTCTGCACCGAGCCGCCATCGTTCAGGATCTGGTTGCGCA 1392 Query 146015 ATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCT 146074 || || || | ||| || || | || || | || || |||| ||| || | Sbjct 1393 CCTCCGGGGTCCAGATGCCCAGCTCAATCAGCTCCCTCATCAGGTACTTGTTCACAATGG 1452 Query 146075 GAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACT 146134 |||||||| || || ||||| | |||| |||| ||| ||||||||| |||| Sbjct 1453 TGAACTCGCCCGCAAGCACGCGGCGGTTGTACATGTTGGACGTGTACGGCTCGATGGACT 1512 Query 146135 CGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGT 146194 |||||||||| || || || ||||||| || || ||||| ||| || |||| |||| Sbjct 1513 CGTTGTTACCCAGGATTTGAGCCGTCGAGGCCGTCGGCATCGGCGCGACGAGCAGCGAGT 1572 Query 146195 TTCTCACGCCGTG 146207 | | | |||||| Sbjct 1573 TGCGGATGCCGTG 1585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475281308830720