Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq36271 185 1e-41 >seq36271 Length=16985 Score = 185 bits (204), Expect = 1e-41 Identities = 458/684 (67%), Gaps = 17/684 (2%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCT---CAGATAGTACAT 203895 ||||||||| |||||||| ||||||| |||| | || || || |||||||| Sbjct 1094 CTTGTCCACGGTGAACTGGATGGCGT---CGGCTTTCGGGCGTCCGCGCATGTAGTACAT 1150 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||| ||||| || ||||| | ||| |||| | ||||||||| | || ||||| | | | Sbjct 1151 GCCCGTCTTGAGCCCCTTTTTCCAGGCGTAGAAGTGCATGGATGTGAGCTTGCTGATGGT 1210 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 |||||||| ||||| ||||| || |||||||| ||| ||| ||||||| || || | Sbjct 1211 CGGGTCGGCGATGTGGATGTTGAGCGACTGGCTCTGGCAAATG-TAGGCGCCGCGGTCGG 1269 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | | | | | | ||||||||| |||||||||||||||||| || ||| || Sbjct 1270 CCGAGAGGTCCAACACCGTCTTCTGCTTGATCTCCCACACCGTCTTGTACTTGTCCTTGA 1329 Query 204075 TGTGTTGAGGCA-CATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT-CA 204131 | | | || | ||||| || | ||| | ||||||| ||| || | ||| Sbjct 1330 TTTTGTCCGGAATGATCTT--GACCTTCTGCACCGAGCCGCCATCGTTCAGGA-TCTGGT 1386 Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 | | | |||| ||| ||||||| | |||||||||| || ||||| ||| | Sbjct 1387 TGCGCACCTCCGGGGTCCAGATGCCCAGCTCAATCAGCTCCCTCATCAGGTACTTGTTCA 1446 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 || || || || | ||||| | ||| || ||| |||| ||| | || |||| Sbjct 1447 CAATGGTGAACTCGCCCGCAAGCACGCGGCGGTTGTACATGTTGGACGTGTACGGCTCGA 1506 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | ||||||||| || | || ||||| || |||||| ||||| || || | ||||| Sbjct 1507 TGGACTCGTTGTTACCCAGGATTTGAGCCGTCGAGGCCGTCGGCATCGGCGCGACGAGCA 1566 Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC---GTGCA 204368 | |||||||| | |||| || || | |||| || | || |||||| || Sbjct 1567 GCGAGTTGCGGATGCCGTGCTTAATCACGTTCTGCTTGAGCGTGGCCCAGTCCCACAGCC 1626 Query 204369 TCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGC 204428 || | || | |||||||||||||||||||| |||||||| | ||| | || || Sbjct 1627 CCGAATCAGGGGTGACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTGGCAGGAGAGC 1686 Query 204429 CCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGT 204488 ||| | ||||| || || ||| | || | || ||| | |||||| Sbjct 1687 CCTGGAACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTCCATCGACGTCTCCATGGAAG 1746 Query 204489 GATAGTACATGGTCTCAAAGATCT 204512 ||||| |||||||||||||||| Sbjct 1747 CGTAGTAAATGGTCTCAAAGATCT 1770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794788156359680