Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq32285 132 1e-25 seq30472 123 6e-23 seq35386 107 5e-18 seq12976 107 5e-18 seq25936 96.9 8e-15 >seq32285 Length=18199 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| ||||||||| || || Sbjct 8356 CGCAGACGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 8415 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||||||||| |||||||||||||| || || || Sbjct 8416 CGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCC 8475 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || ||||||||| |||| | ||| | | || ||||| | | Sbjct 8476 TCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACATCTAGC 8535 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| | ||| ||||| || || || Sbjct 8536 GTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTG 8573 Score = 104 bits (114), Expect = 6e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| ||||||||| || || Sbjct 7672 CGCAGACGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 7731 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| ||||||||||| |||||||||||||| || || || Sbjct 7732 CGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCC 7791 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACG 199555 || || || || || ||||||||| Sbjct 7792 TCCTTGTCTTGGATTTTCTGCTTCACG 7818 >seq30472 Length=20972 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| | || |||||||| |||| ||||||||| | || Sbjct 12001 CGCAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTTAGCGTA 12060 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||||||||| |||||||||||||| || |||||| Sbjct 12061 CGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCT 12120 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || ||||| ||| |||| | ||| | | || || || | | Sbjct 12121 TCCTTGTCTTGGATTTTCTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCAAGC 12180 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| || || ||||| ||||| || Sbjct 12181 GTGATCGTCTTGCCCGTCAGCGTCTTCACGAAAATCTG 12218 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||| || | ||| | || |||||||| |||| ||||||||| | || Sbjct 11773 CGAAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTTAGCGTA 11832 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||||||||| |||||||||||||| || || ||| Sbjct 11833 CGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCT 11892 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || ||||| || |||| | ||| | | || || || | | Sbjct 11893 TCCTTGTCTTGGATTTTCTGCTTGACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGC 11952 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| || || ||||| || || || Sbjct 11953 GTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTG 11990 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| | || |||||||| |||| ||||||||| || || Sbjct 12229 CGCAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTA 12288 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| |||||||| || |||||||||||||| || || ||| Sbjct 12289 CGACCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGCGGGATGCCT 12348 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || ||||| || |||| | ||| | | || || || | | Sbjct 12349 TCCTTATCTTGGATTTTCTGCTTGACATTATCGATCGAGTCCGAAGGCTCCACGTCGAGC 12408 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| || || ||||| || || || Sbjct 12409 GTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTG 12446 >seq35386 Length=12911 Score = 107 bits (118), Expect = 5e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | | || | || || || |||||||| |||||||||| Sbjct 4747 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 4688 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | || ||||||||||| || || ||||| ||||| || || ||||| || | Sbjct 4687 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 4628 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 | | | |||| | | || ||||| | |||||| ||||| ||||| || |||||||||| Sbjct 4627 CAATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACAA 4568 Query 199620 AAATTTG 199626 | || || Sbjct 4567 AGATCTG 4561 >seq12976 Length=6227 Score = 107 bits (118), Expect = 5e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | | || | || || || |||||||| |||||||||| Sbjct 3690 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 3631 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | || ||||||||||| || || ||||| ||||| || || ||||| || | Sbjct 3630 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGT 3571 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 | | | |||| | | || ||||| | |||||| ||||| ||||| || |||||||||| Sbjct 3570 CAATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACAA 3511 Query 199620 AAATTTG 199626 | || || Sbjct 3510 AGATCTG 3504 >seq25936 Length=21514 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || ||||||||||| |||| ||||||||| | | ||| | ||||| Sbjct 2463 AGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCC 2404 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| || |||||||| |||||||||||||| || Sbjct 2403 TCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 2363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178363805034176