Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq36271 172 7e-38 seq22780 107 2e-18 seq17832 107 2e-18 seq32329 102 1e-16 seq27878 102 1e-16 seq27877 102 1e-16 seq26115 102 1e-16 seq36549 93.3 5e-14 >seq36271 Length=16985 Score = 172 bits (190), Expect = 7e-38 Identities = 424/632 (67%), Gaps = 11/632 (2%) Strand=Plus/Minus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| | ||| ||||||| || ||| | || ||||| | || |||| | | Sbjct 2861 CCCGCAGCAGATGATCATGCGCGTGGCGCTGGGCATCCACAAGACGGACGTTGAGGCCGC 2802 Query 111671 TTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCT 111729 | || |||| ||||| ||||| | | || | |||| ||||| || || || || | Sbjct 2801 TCTGCAGACGTACGAGCTCATGTCGCAGATGTTT-TTCACGCACGCGACGCCCACGCTGT 2743 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 ||||||| || || || | || || | || || ||||| | || | |||| | Sbjct 2742 TCAACGCCGGCACGCCGCGTCCTCAGCTCTCGTCCTGCTTCCTCCTGGCCATGCAGGACG 2683 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 | || || | |||||||||| ||| || | | ||||| ||||| |||||||| | Sbjct 2682 ACTCGATTGAGGGCATTTACGACACACTGAAGCAGTGTGCGTGTATCTCCAAGTGGGCGG 2623 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAA 111909 | || || || || || || || || | || | || ||| | || || | Sbjct 2622 GCGGGATTGGCATCAGTATGCACAATATCCGTGCGACGAACAGCTACATTCGCGGCACGA 2563 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 |||| || | || || || || ||||| || || ||||||| ||| || || || | Sbjct 2562 ATGGCTCCTCCAACGGCATCATCCCCATGCTGCGTGTGTTTAACGACACGGCACGATACG 2503 Query 111970 TAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 112026 | |||| | || | ||||||||||| |||| |||| || ||||| ||||||| Sbjct 2502 TGGACCAGGGCGGCGGCAAGCGCAAGGGATCGTTCGCCATCTACCTGGAGCCCTGGCACG 2443 Query 112027 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC- 112085 | || | | |||||||| || |||| ||||| || | ||| | | | | || Sbjct 2442 CCGACGTGTTCGAGTTCCTGGACCTGCGGAAGAACCACGGCAACGAGCTG-CACCGCGCG 2384 Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG-AGGAGAG 112144 ||||| || |||| ||| |||||| | || ||||||||||||||| | || | || ||| Sbjct 2383 CGCGACCTGTTCTACGCGCTCTGGGTGCCGGATCTCTTCATGAAGCGCGTCGAAGCAGA- 2325 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTG 112203 ||| | ||| ||||| || || || |||| ||||| |||| ||| ||| | ||| | Sbjct 2324 CGGCCAGTGGAGCCTCTTCTGCCCCAACGAGGCGCCCGGGCTCTACGAGTGCTG-GGGCG 2266 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAG 112235 | ||||| || ||||| ||| |||||||||| Sbjct 2265 ACGAGTTCGAGGCCCTGTACGAAAAGTACGAG 2234 >seq22780 Length=3860 Score = 107 bits (118), Expect = 2e-18 Identities = 255/380 (67%), Gaps = 18/380 (5%) Strand=Plus/Minus Query 176702 GGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCG 176761 |||||||||| ||| |||| ||||| | |||||||||||||| || |||| ||| Sbjct 1078 GGCCAGAAGTGGTGGATCAAATTGATCACCAGACCCTTGATGTGACTGCCATCGTGATCC 1019 Query 176762 GCATCCGTCATGATCATGAGACGACCATACCGAAG---CTCGGAAACATCTTGATAGTCC 176818 ||| | ||||||||| || | ||||| || || || || | || | ||| Sbjct 1018 TGATCTGCCATGATCATAAGGTGGCCATAACGCAGGCCCTTGGTAGACTCGT---AGTTT 962 Query 176819 TTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTT---GAACTCTTGGTTTGATGTG 176875 | || | | || ||||||| |||||| |||| || ||||| ||| | Sbjct 961 TGGCCGTACTTGAG-CCCAAGAA--TCTTGACCACGTTCTGGATCTCTTCGTTCTTCACG 905 Query 176876 AGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCG 176935 | ||| | | || |||||||| ||| ||| ||||| | || ||||| ||| Sbjct 904 ATCTGCGAGTGGCTCGCTTCACGAACGTTCAGCATCTTACCACGCAAGGGAAAGACGCCG 845 Query 176936 TAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCC 176995 || | || | ||||| |||| ||||| | ||||||| ||| || || || || || Sbjct 844 TAATAGTCTCTGCCAACAACAGCAAGACCGCCCACCGCGACCGTCTTGGCCGAGTCTCCT 785 Query 176996 TCTGTCACGATGAGTGTACA---CTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCA 177052 ||||| | ||| | || || |||||| | ||||||||| || | |||||||||| Sbjct 784 TCTGTGAGGATCAACGTGCAGTCCTTGCCC---TTTGCCGTACCAGCGTGGTTCGCATCA 728 Query 177053 TCCAATTTGGGAATACCAGT 177072 |||| || |||||||| || Sbjct 727 TCCAGCTTCGGAATACCCGT 708 >seq17832 Length=15358 Score = 107 bits (118), Expect = 2e-18 Identities = 255/380 (67%), Gaps = 18/380 (5%) Strand=Plus/Plus Query 176702 GGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCG 176761 |||||||||| ||| |||| ||||| | |||||||||||||| || |||| ||| Sbjct 14405 GGCCAGAAGTGGTGGATCAAATTGATCACCAGACCCTTGATGTGACTGCCATCGTGATCC 14464 Query 176762 GCATCCGTCATGATCATGAGACGACCATACCGAAG---CTCGGAAACATCTTGATAGTCC 176818 ||| | ||||||||| || | ||||| || || || || | || | ||| Sbjct 14465 TGATCTGCCATGATCATAAGGTGGCCATAACGCAGGCCCTTGGTAGACTCGT---AGTTT 14521 Query 176819 TTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTT---GAACTCTTGGTTTGATGTG 176875 | || | | || ||||||| |||||| |||| || ||||| ||| | Sbjct 14522 TGGCCGTACTTGAG-CCCAAGAA--TCTTGACCACGTTCTGGATCTCTTCGTTCTTCACG 14578 Query 176876 AGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCG 176935 | ||| | | || |||||||| ||| ||| ||||| | || ||||| ||| Sbjct 14579 ATCTGCGAGTGGCTCGCTTCACGAACGTTCAGCATCTTACCACGCAAGGGAAAGACGCCG 14638 Query 176936 TAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCC 176995 || | || | ||||| |||| ||||| | ||||||| ||| || || || || || Sbjct 14639 TAATAGTCTCTGCCAACAACAGCAAGACCGCCCACCGCGACCGTCTTGGCCGAGTCTCCT 14698 Query 176996 TCTGTCACGATGAGTGTACA---CTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCA 177052 ||||| | ||| | || || |||||| | ||||||||| || | |||||||||| Sbjct 14699 TCTGTGAGGATCAACGTGCAGTCCTTGCCC---TTTGCCGTACCAGCGTGGTTCGCATCA 14755 Query 177053 TCCAATTTGGGAATACCAGT 177072 |||| || |||||||| || Sbjct 14756 TCCAGCTTCGGAATACCCGT 14775 >seq32329 Length=12294 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || | || || || ||| ||||| ||||||||||| || || |||||| | Sbjct 11289 GAGCGCCTGCTGGCGTTCGCCGCTGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCG 11348 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 || | ||||| |||||||| || || ||||| ||||| ||||||| |||||||| ||| Sbjct 11349 ATCTTCTGGCTGAAGAAGCGCGGGCTGATGCCCGGTCTGAGCTTCTCGAACGAGCTCATC 11408 Query 102300 TCTCGTGACGAGGG 102313 ||||||||||| Sbjct 11409 AGCCGTGACGAGGG 11422 >seq27878 Length=10574 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || | || || || ||| ||||| ||||||||||| || || |||||| | Sbjct 1006 GAGCGCCTGCTGGCGTTCGCCGCTGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCG 947 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 || | ||||| |||||||| || || ||||| ||||| ||||||| |||||||| ||| Sbjct 946 ATCTTCTGGCTGAAGAAGCGCGGGCTGATGCCCGGTCTGAGCTTCTCGAACGAGCTCATC 887 Query 102300 TCTCGTGACGAGGG 102313 ||||||||||| Sbjct 886 AGCCGTGACGAGGG 873 >seq27877 Length=1900 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || | || || || ||| ||||| ||||||||||| || || |||||| | Sbjct 1006 GAGCGCCTGCTGGCGTTCGCCGCTGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCG 947 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 || | ||||| |||||||| || || ||||| ||||| ||||||| |||||||| ||| Sbjct 946 ATCTTCTGGCTGAAGAAGCGCGGGCTGATGCCCGGTCTGAGCTTCTCGAACGAGCTCATC 887 Query 102300 TCTCGTGACGAGGG 102313 ||||||||||| Sbjct 886 AGCCGTGACGAGGG 873 >seq26115 Length=10575 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || | || || || ||| ||||| ||||||||||| || || |||||| | Sbjct 9570 GAGCGCCTGCTGGCGTTCGCCGCTGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCG 9629 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 || | ||||| |||||||| || || ||||| ||||| ||||||| |||||||| ||| Sbjct 9630 ATCTTCTGGCTGAAGAAGCGCGGGCTGATGCCCGGTCTGAGCTTCTCGAACGAGCTCATC 9689 Query 102300 TCTCGTGACGAGGG 102313 ||||||||||| Sbjct 9690 AGCCGTGACGAGGG 9703 >seq36549 Length=11370 Score = 93.3 bits (102), Expect = 5e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA- 16118 |||| ||||| |||||||| ||||| |||||||| || | |||||| ||| || | Sbjct 4145 CCACAGCATCGATCTCATCGATGAACACGATGCACGG--GGCGTTCGCGCGCGCCTCCTT 4202 Query 16119 -AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 16177 || || || || |||||| | |||||||| || |||||||| | |||| | | | Sbjct 4203 GAACAGGTCACGCACACGCGACGGACCCACACCGACGAACATCTCGATGAAGTCCGAGCC 4262 Query 16178 GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 ||| || ||| || ||| | | ||||| || |||| ||| || || ||||| Sbjct 4263 AGAAATGCTGAAGAACGGCACACTCGCCTCACCAGCCGTGGCCTTGGCCAGCAGCGTCTT 4322 Query 16238 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 16289 ||||||||| ||| || | || || || || || |||||||||||| Sbjct 4323 ACCCGTACCGGGCGGGCCGACAAGCAGCGCGCCCTTGGGGATCTTGGCGCCA 4374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620455865308160