Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq36271 170 2e-37 seq36549 168 8e-37 seq32329 86.0 7e-12 seq27878 86.0 7e-12 seq27877 86.0 7e-12 seq26115 86.0 7e-12 >seq36271 Length=16985 Score = 170 bits (188), Expect = 2e-37 Identities = 629/966 (65%), Gaps = 32/966 (3%) Strand=Plus/Plus Query 110092 AGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTA 110151 || || ||| | || || ||||||||||| |||| ||| | |||||| || |||||| Sbjct 1818 AGGATGAACGCGTCGGCGAGACCCTGAACGCCGATACCGACGGGGCGGTGGCGCATGTTG 1877 Query 110152 GAGCGT-CGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTT 110210 || ||| || || | |||||||| ||||| ||| |||||| || || || Sbjct 1878 GA-CGTGCGCGCCTCCGCCACGGGGTAGTAGTTGACGTCAATGACCTTGTTCAGGTTGCG 1936 Query 110211 CGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATT 110270 ||||| |||||| | || | || |||| ||| | |||| || | || | || Sbjct 1937 GGTCACCACCTTCGTCACCTCGTACAGCTTGTGGTAGTTGAACA----CGCCGCCCTCTT 1992 Query 110271 G-ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG- 110328 || | ||||| || || | ||||| || |||||||| | |||||| | || Sbjct 1993 CCACGAACTTGGGCAGCGCCACGGACGCCAGGTTGCACACGGCCACCTCGTCA--GGCGA 2050 Query 110329 -GTGTATTCCAAAATTTCCGTACACAAGTTG---GAACTCTTAATGACACCCAAGTTCTT 110384 | ||| |||| | || ||||||||| || | | || |||| ||||| Sbjct 2051 CGAGTACTCCATGACCTCACAGCACAAGTTGCTCGAGCGGATCGTG---CCCAGGTTCTG 2107 Query 110385 CTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGT 110444 ||| ||||| ||| |||| | ||||| | |||||| | || || || || | Sbjct 2108 CTGGTTCGACTTGCGGTTGGCCGAGTCCTTGAACAGCATGAACGGCACGCCCGTCTCAAT 2167 Query 110445 CTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGG--GACAGT--TGCGTTAGCGA 110500 ||| | | || |||| ||| || | || ||| || || |||| |||| Sbjct 2168 CTGGGCGTCCAGGATGGAGAACCA--CAGCTGCTGCGCTTTGATCGTCTTGCG--AGCGC 2223 Query 110501 GACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTA-CACATCAGAA 110559 | || |||| ||||||||| ||||| | |||| || || | || | ||| || | Sbjct 2224 GTCCCTCCTTCTCGTACTTTTCGTACAGGGCCTCGAACTCGTCGCCCCAGCAC-TCGTAG 2282 Query 110560 AGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTC 110619 || || ||||| || ||| ||||||||| ||| | || | | || || | |||| Sbjct 2283 AGCCCGGGCGCCTCGTTGGGGCAGAAGAGGCTCCACTGGCCGTCTGCTTCGACGCGCTTC 2342 Query 110620 ATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG-GCAACGAGCCTCTTCATC 110678 ||||| || || || | ||| | ||| |||| ||||| || || | || || | | Sbjct 2343 ATGAAGAGATCCGGCACCCAGAGCGCGTAGAACAGGTCGCGCGCGCGGTGCAGCT-CGTT 2401 Query 110679 ACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATA 110738 || ||||| || || |||| || || | | || | |||||| || || || || Sbjct 2402 GCCGTGGTTCTTCCGCAGGTCCAGGAACTCGAACACGTCGGCGTGCCAGGGCTCCAGGTA 2461 Query 110739 GACAGCGATGGATCCCTTACGACGACC--CGCC-TGGTTAACATAGCGTGCTGTGGCATT 110795 || |||| |||||||| || || |||| |||| || || ||||| ||| | || Sbjct 2462 GATGGCGAACGATCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTATCGTGCCGTGTCGTT 2521 Query 110796 GAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGA 110855 || || | ||||| || || || || | ||| ||||| || || | ||| | Sbjct 2522 AAACACACGCAGCATGGGGATGATGCCGTTGGAGGAGCCATTCGTGCCGCGAATGTAGCT 2581 Query 110856 CTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTG 110915 || | ||||| || | ||| ||| || ||||| || ||||||||||| || Sbjct 2582 GTTCGTCGCACGGATATTGTGCATACTGATGCCAATCCCGCCCGCCCACTTGGAGATACA 2641 Query 110916 TGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAG 110975 ||||||| | ||||| | ||||| || |||||||| || ||| |||| | || Sbjct 2642 CGCACACTGCTTCAGTGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGGAG 2701 Query 110976 AAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATG 111035 ||||| || || | ||||||||| ||||| || || ||||| || || || ||||| || Sbjct 2702 GAAGCAGGACGAGAGCTGAGGACGCGGCGTGCCGGCGTTGAACAGCGTGGGCGTCGCGTG 2761 Query 111036 AATGAA 111041 |||| Sbjct 2762 CGTGAA 2767 >seq36549 Length=11370 Score = 168 bits (186), Expect = 8e-37 Identities = 350/511 (68%), Gaps = 19/511 (4%) Strand=Plus/Plus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| ||||| || || || | || | || |||||||| | |||||| Sbjct 3961 ATCTGCCGGTCGAATCGACCAGGACGCAGGATGGCCTTGTCCAGAATATCAGCGCGGTTT 4020 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAGA 11613 ||| | || | || || | ||| ||| || | ||| || ||||| || || Sbjct 4021 GTACCAGCCAGCACCACCACGCCT---TCACTGGAGTTGAAGCCATCCATCTCCACTAGC 4077 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTC 11673 |||||||||| ||| | ||||||||| ||||| | | | | |||| ||||| Sbjct 4078 AGCTGGTTGAGCGTATTTTCACGCTCGTCGTTACCGCCCGAAA-AGTTGCCCTT-GCTTC 4135 Query 11674 TT--AC---CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG 11728 | || | ||||| || |||||||||||||| ||||| ||||| ||| || || | Sbjct 4136 GTGAACGCGCCACAGCATCGATCTCATCGATGAACACGATGCACGGGGCGTTCGCGCGCG 4195 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 ||| | ||| || ||||| |||||| || || ||||| ||||||||||| | ||||| Sbjct 4196 CCTCCTTGAACAGGTCACGCACACGCGACGGACCCACACCGACGAACATCTCGATGAAGT 4255 Query 11789 TTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 | | ||| || ||||| ||| || ||| | | ||||||||| |||| || || Sbjct 4256 CCGAGCCAGAAATGCTGAA-GAACGGCACACTCGCCTCACCAGCCGTGGCCTTGGCCAGC 4314 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 || |||||||||||||| || | || | || || ||||| |||||||||||| ||| Sbjct 4315 AGCGTCTTACCCGTACCGGGCGGGCCGACAAGCAGCGCGCCCTTGGGGATCTTGGCGCCA 4374 Query 11908 --CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCT 11965 || | | |||||| | || ||||||||||| | |||| | |||| || Sbjct 4375 AGCTGC--GTGAAGCGCTTCTGGTTGCGAAGGAAGTCCACGAACTCCATGATCTCCTTCT 4432 Query 11966 TGGCGGAGTCGATACCCTCAACATCGGTGAA 11996 |||| ||| | ||| | ||||| |||| Sbjct 4433 TGGCCTCGTCCACACCAGCCACATCCTTGAA 4463 >seq32329 Length=12294 Score = 86.0 bits (94), Expect = 7e-12 Identities = 123/172 (72%), Gaps = 5/172 (3%) Strand=Plus/Minus Query 119528 GATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGAT 119587 ||||||||| || ||||| || || ||||| || || | ||||| ||||| ||||| Sbjct 11408 GATGAGCTCGTTCGAGAAGCTCAGACCGGGCATCAGCCCGCGCTTCTTCAGCCAGAAGAT 11349 Query 119588 GGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAATAGACGCTC 119647 | || || || || |||||||||||||||||| |||||| || | || ||||| Sbjct 11348 CGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACAGCGGCGAACGCCAGCAGGCGCTC 11289 Query 119648 AGCAAAAGGTCGAGA----CTTGTCGAACCACTTGAGAGCCCAGTTGGCCTT 119695 | || | ||| | | |||| |||||||||| ||||| | |||||| Sbjct 11288 CGGGTAA-GACGACACGCGCGGGTCGCACCACTTGAGCGCCCACTGGGCCTT 11238 >seq27878 Length=10574 Score = 86.0 bits (94), Expect = 7e-12 Identities = 123/172 (72%), Gaps = 5/172 (3%) Strand=Plus/Plus Query 119528 GATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGAT 119587 ||||||||| || ||||| || || ||||| || || | ||||| ||||| ||||| Sbjct 887 GATGAGCTCGTTCGAGAAGCTCAGACCGGGCATCAGCCCGCGCTTCTTCAGCCAGAAGAT 946 Query 119588 GGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAATAGACGCTC 119647 | || || || || |||||||||||||||||| |||||| || | || ||||| Sbjct 947 CGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACAGCGGCGAACGCCAGCAGGCGCTC 1006 Query 119648 AGCAAAAGGTCGAGA----CTTGTCGAACCACTTGAGAGCCCAGTTGGCCTT 119695 | || | ||| | | |||| |||||||||| ||||| | |||||| Sbjct 1007 CGGGTAA-GACGACACGCGCGGGTCGCACCACTTGAGCGCCCACTGGGCCTT 1057 >seq27877 Length=1900 Score = 86.0 bits (94), Expect = 7e-12 Identities = 123/172 (72%), Gaps = 5/172 (3%) Strand=Plus/Plus Query 119528 GATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGAT 119587 ||||||||| || ||||| || || ||||| || || | ||||| ||||| ||||| Sbjct 887 GATGAGCTCGTTCGAGAAGCTCAGACCGGGCATCAGCCCGCGCTTCTTCAGCCAGAAGAT 946 Query 119588 GGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAATAGACGCTC 119647 | || || || || |||||||||||||||||| |||||| || | || ||||| Sbjct 947 CGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACAGCGGCGAACGCCAGCAGGCGCTC 1006 Query 119648 AGCAAAAGGTCGAGA----CTTGTCGAACCACTTGAGAGCCCAGTTGGCCTT 119695 | || | ||| | | |||| |||||||||| ||||| | |||||| Sbjct 1007 CGGGTAA-GACGACACGCGCGGGTCGCACCACTTGAGCGCCCACTGGGCCTT 1057 >seq26115 Length=10575 Score = 86.0 bits (94), Expect = 7e-12 Identities = 123/172 (72%), Gaps = 5/172 (3%) Strand=Plus/Minus Query 119528 GATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGAT 119587 ||||||||| || ||||| || || ||||| || || | ||||| ||||| ||||| Sbjct 9689 GATGAGCTCGTTCGAGAAGCTCAGACCGGGCATCAGCCCGCGCTTCTTCAGCCAGAAGAT 9630 Query 119588 GGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAATAGACGCTC 119647 | || || || || |||||||||||||||||| |||||| || | || ||||| Sbjct 9629 CGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACAGCGGCGAACGCCAGCAGGCGCTC 9570 Query 119648 AGCAAAAGGTCGAGA----CTTGTCGAACCACTTGAGAGCCCAGTTGGCCTT 119695 | || | ||| | | |||| |||||||||| ||||| | |||||| Sbjct 9569 CGGGTAA-GACGACACGCGCGGGTCGCACCACTTGAGCGCCCACTGGGCCTT 9519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588704128678400