Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq36271 154 2e-32 seq32329 109 6e-19 seq27878 109 6e-19 seq27877 109 6e-19 seq26115 109 6e-19 >seq36271 Length=16985 Score = 154 bits (170), Expect = 2e-32 Identities = 665/1035 (64%), Gaps = 26/1035 (3%) Strand=Plus/Plus Query 106280 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 106339 || |||||||| ||||| || | ||| | || | ||| ||||| || ||| | ||||| Sbjct 1830 TCGGCGAGACCCTGAACGCCGATACCGACGGGGCGGTGGCGCATGTTGGACGTGCGCGCC 1889 Query 106340 GTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 106399 | | ||||| || | || ||||||||| ||| || || ||| || | ||| Sbjct 1890 TCCGCCACGGGGTAGTAGTTGACGTCAATGACCTTGTTCAGGTTGCGGGTCACCACCTTC 1949 Query 106400 GTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA 106459 || | || | || || | || | || || |||||| || |||| || Sbjct 1950 GTCACCTCGTACAGCTTGTGGTAGTTGAACACGCCGCCCTCTTCCACGA---ACTTGGGC 2006 Query 106460 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 106519 || || | || |||| ||||| || ||| ||| || | |||||| | | Sbjct 2007 AGCGCCACGGACGCCAGGTTGCACACGGCCACCTCGTCAGGCGACGAGTACTCCATGACC 2066 Query 106520 TCTGTACACAAGTTGGAACTCTTA---ATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || ||||||||| ||| ||||| |||| |||| ||||| ||| | Sbjct 2067 TCACAGCACAAGTTG---CTCGAGCGGATCGTGCCCAGGTTCTGCTGGTTCGACTTGCGG 2123 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||| || |||||| | |||||| | ||| |||||||| |||| | | || || Sbjct 2124 TTGGCCGAGTCCTTGAACAGCATGAACGGCACGCCCGTCTCAATCTGGGCGTCCAGGATG 2183 Query 106637 GCCTTCCACACATCGGCGGCTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTAC 106693 | ||||| | || || | | || | ||| || ||||||||| ||||||| Sbjct 2184 GAGAACCACAGCT--GCTGC-GCTTTGATCGTCTTGCGAGCGCGTCCCTCCTTCTCGTAC 2240 Query 106694 TTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGCCTTGTC 106752 ||| ||| ||||| || ||||| || ||| | || ||| |||| || || |||| || Sbjct 2241 TTTTCGTACAGGGCCTCGAACTCGTCGCCC-CAGCACTCGTAGAGCCCGGGCGCCTCGTT 2299 Query 106753 TGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAAT 106812 || ||||| || ||| || || | | || || ||||||||||| || || || | Sbjct 2300 GGGGCAGAAGAGGCTCCACTGGCCGTCTGCTTCGACGCGCTTCATGAAGAGATCCGGCAC 2359 Query 106813 CCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTA 106871 ||| || | | || || || | | | | || | |||| || ||||| || | Sbjct 2360 CCAGAGCGCGTAGAACAGGTCGCGCGCGCGGTGCAGC-TCGTTGCCGTGGTTCTTCCGCA 2418 Query 106872 ACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCT 106931 || |||||||| | | || |||||||| ||||| || |||| |||| ||||||| Sbjct 2419 GGTCCAGGAACTCGAACACGTCGGCGTGCCAGGGCTCCAGGTAGATGGCGAACGATCCCT 2478 Query 106932 TTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTG 106988 | || | || | || | || || || || ||| ||||||| || || ||||| | Sbjct 2479 TGCGCTTGCCGCCGCCCTGGTCCACGTATCGTGCCGTGTCGTTAAACACACGCAGCATGG 2538 Query 106989 GAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACA 107047 | || || || | || ||||| || || ||||| || | || | || | | | Sbjct 2539 GGATGATGCCGTTGGAGGAGCCATTCGTGCCGCGAAT-GTAGCTGTTCGTCGCACGGATA 2597 Query 107048 TCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGA 107107 | || || || ||||| || || |||||||| ||||| |||||||| | | || Sbjct 2598 TTGTGCATACTGATGCCAATCCCGCCCGCCCACTTGGAGATACACGCACACTGCTTCAGT 2657 Query 107108 GTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATC 107167 || | || || || | || ||||| |||| |||| | |||||||| || | | Sbjct 2658 GTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGGAGGAAGCAGGACGAGAGC 2717 Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 107226 || || | || || || || ||||| || || || || ||||| |||| | || | || Sbjct 2718 TGAGGACGCGGCGTGCCGGCGTTGAACAGCGTGGGCGTCGCGTGCGTGAA-AAACATCTG 2776 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 ||||| ||||| |||| || | | |||| ||| | ||||||||| | || Sbjct 2777 CGACATGAGCTCGTACGTCTGCAGAGCGGCCTCAACGTCCGTCTTGTGGATGCCCAGCGC 2836 Query 107287 CACACGCATAAACAT 107301 ||| ||||| | ||| Sbjct 2837 CACGCGCATGATCAT 2851 >seq32329 Length=12294 Score = 109 bits (120), Expect = 6e-19 Identities = 333/504 (66%), Gaps = 18/504 (4%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| ||||| |||||||| || | || || | ||||| Sbjct 11728 TACTCGCCCACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 11669 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 117104 |||| || || ||||| |||| | || | ||| |||||| || || ||||| Sbjct 11668 CAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACGCCCAACGAGTAC-AGCAGACG 11610 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 |||| |||| |||| ||||||| | |||| | |||||||| ||||| || | Sbjct 11609 GTCCGCCACAAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATCAGCTCCAC 11550 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 || || | ||| | | |||| | | ||| ||| | ||||| || ||| || ||| Sbjct 11549 CGGCAGCGAGTCGCACACGAACTCGTGCTCGATCACCACCGCGTCACGCACAATCTGGTG 11490 Query 117225 GATAG---TTTC-GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---GCAA 117277 | | || || || || | || || |||| || | || | || | Sbjct 11489 CACGCGGCTCTCAGGCAGCTTGT---TCACC---AG-CTTGGAGTACAGCAGGCACGCGA 11437 Query 117278 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCA 117337 | ||| ||| | ||||| || ||| || || || || ||||||| || || |||| Sbjct 11436 AGTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCA 11377 Query 117338 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 117397 | || || |||||||||| ||| | || | |||||| || || ||||||||||| |||| Sbjct 11376 TCAGCCCGCGCTTCTTCAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATGCCCT 11317 Query 117398 CCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGAC-TTTGTGTCAAACCAT 117456 ||||| || ||||| | |||||||| | | | || ||| || | ||| |||| Sbjct 11316 CCACAGCGGCGAACGCCAGCAGGCGCTCCGGGTAAGA-CGACACGCGCGGGTCGCACCAC 11258 Query 117457 TTCATTGCCCATTTCGCCTTCTTC 117480 || | ||||| | ||||||||| Sbjct 11257 TTGAGCGCCCACTGGGCCTTCTTC 11234 >seq27878 Length=10574 Score = 109 bits (120), Expect = 6e-19 Identities = 333/504 (66%), Gaps = 18/504 (4%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| ||||| |||||||| || | || || | ||||| Sbjct 567 TACTCGCCCACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 626 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 117104 |||| || || ||||| |||| | || | ||| |||||| || || ||||| Sbjct 627 CAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACGCCCAACGAGTAC-AGCAGACG 685 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 |||| |||| |||| ||||||| | |||| | |||||||| ||||| || | Sbjct 686 GTCCGCCACAAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATCAGCTCCAC 745 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 || || | ||| | | |||| | | ||| ||| | ||||| || ||| || ||| Sbjct 746 CGGCAGCGAGTCGCACACGAACTCGTGCTCGATCACCACCGCGTCACGCACAATCTGGTG 805 Query 117225 GATAG---TTTC-GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---GCAA 117277 | | || || || || | || || |||| || | || | || | Sbjct 806 CACGCGGCTCTCAGGCAGCTTGT---TCACC---AG-CTTGGAGTACAGCAGGCACGCGA 858 Query 117278 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCA 117337 | ||| ||| | ||||| || ||| || || || || ||||||| || || |||| Sbjct 859 AGTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCA 918 Query 117338 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 117397 | || || |||||||||| ||| | || | |||||| || || ||||||||||| |||| Sbjct 919 TCAGCCCGCGCTTCTTCAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATGCCCT 978 Query 117398 CCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGAC-TTTGTGTCAAACCAT 117456 ||||| || ||||| | |||||||| | | | || ||| || | ||| |||| Sbjct 979 CCACAGCGGCGAACGCCAGCAGGCGCTCCGGGTAAGA-CGACACGCGCGGGTCGCACCAC 1037 Query 117457 TTCATTGCCCATTTCGCCTTCTTC 117480 || | ||||| | ||||||||| Sbjct 1038 TTGAGCGCCCACTGGGCCTTCTTC 1061 >seq27877 Length=1900 Score = 109 bits (120), Expect = 6e-19 Identities = 333/504 (66%), Gaps = 18/504 (4%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| ||||| |||||||| || | || || | ||||| Sbjct 567 TACTCGCCCACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 626 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 117104 |||| || || ||||| |||| | || | ||| |||||| || || ||||| Sbjct 627 CAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACGCCCAACGAGTAC-AGCAGACG 685 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 |||| |||| |||| ||||||| | |||| | |||||||| ||||| || | Sbjct 686 GTCCGCCACAAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATCAGCTCCAC 745 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 || || | ||| | | |||| | | ||| ||| | ||||| || ||| || ||| Sbjct 746 CGGCAGCGAGTCGCACACGAACTCGTGCTCGATCACCACCGCGTCACGCACAATCTGGTG 805 Query 117225 GATAG---TTTC-GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---GCAA 117277 | | || || || || | || || |||| || | || | || | Sbjct 806 CACGCGGCTCTCAGGCAGCTTGT---TCACC---AG-CTTGGAGTACAGCAGGCACGCGA 858 Query 117278 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCA 117337 | ||| ||| | ||||| || ||| || || || || ||||||| || || |||| Sbjct 859 AGTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCA 918 Query 117338 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 117397 | || || |||||||||| ||| | || | |||||| || || ||||||||||| |||| Sbjct 919 TCAGCCCGCGCTTCTTCAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATGCCCT 978 Query 117398 CCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGAC-TTTGTGTCAAACCAT 117456 ||||| || ||||| | |||||||| | | | || ||| || | ||| |||| Sbjct 979 CCACAGCGGCGAACGCCAGCAGGCGCTCCGGGTAAGA-CGACACGCGCGGGTCGCACCAC 1037 Query 117457 TTCATTGCCCATTTCGCCTTCTTC 117480 || | ||||| | ||||||||| Sbjct 1038 TTGAGCGCCCACTGGGCCTTCTTC 1061 >seq26115 Length=10575 Score = 109 bits (120), Expect = 6e-19 Identities = 333/504 (66%), Gaps = 18/504 (4%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| ||||| |||||||| || | || || | ||||| Sbjct 10009 TACTCGCCCACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 9950 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 117104 |||| || || ||||| |||| | || | ||| |||||| || || ||||| Sbjct 9949 CAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACGCCCAACGAGTAC-AGCAGACG 9891 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 |||| |||| |||| ||||||| | |||| | |||||||| ||||| || | Sbjct 9890 GTCCGCCACAAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATCAGCTCCAC 9831 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 || || | ||| | | |||| | | ||| ||| | ||||| || ||| || ||| Sbjct 9830 CGGCAGCGAGTCGCACACGAACTCGTGCTCGATCACCACCGCGTCACGCACAATCTGGTG 9771 Query 117225 GATAG---TTTC-GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---GCAA 117277 | | || || || || | || || |||| || | || | || | Sbjct 9770 CACGCGGCTCTCAGGCAGCTTGT---TCACC---AG-CTTGGAGTACAGCAGGCACGCGA 9718 Query 117278 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCA 117337 | ||| ||| | ||||| || ||| || || || || ||||||| || || |||| Sbjct 9717 AGTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCA 9658 Query 117338 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 117397 | || || |||||||||| ||| | || | |||||| || || ||||||||||| |||| Sbjct 9657 TCAGCCCGCGCTTCTTCAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATGCCCT 9598 Query 117398 CCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGAC-TTTGTGTCAAACCAT 117456 ||||| || ||||| | |||||||| | | | || ||| || | ||| |||| Sbjct 9597 CCACAGCGGCGAACGCCAGCAGGCGCTCCGGGTAAGA-CGACACGCGCGGGTCGCACCAC 9539 Query 117457 TTCATTGCCCATTTCGCCTTCTTC 117480 || | ||||| | ||||||||| Sbjct 9538 TTGAGCGCCCACTGGGCCTTCTTC 9515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589708464862720