Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq36228 223 3e-53 >seq36228 Length=63081 Score = 223 bits (246), Expect = 3e-53 Identities = 420/613 (69%), Gaps = 14/613 (2%) Strand=Plus/Minus Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850 ||||| ||| ||||| |||||||| | |||||| ||||| ||||| || | ||| Sbjct 48586 AGCTGCTTCTGAAGCGGCTCCACGTGGTTCAGGTACACGTGCGCGTCGCCGATAACGTGA 48527 Query 29851 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29910 | || |||||||| | | ||| || || || | || ||| || || | |||| Sbjct 48526 ATGAAATCTCCCGGCTTCAATCCGACCACCTGCGCTACCAGCCGCGTAAGCAGTGCGTAG 48467 Query 29911 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 29970 ||||| ||||| ||||| || |||||||||||||| |||||| |||||| | ||| ||| Sbjct 48466 CTGGCAATGTTGAAGGGCACTCCGAGCCCCATGTCGGCCGACCGCTGGTACATCTGGCAC 48407 Query 29971 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATG 30030 || ||||| |||||| ||| || || || || | |||||||||| || || ||||| Sbjct 48406 GACAGCTCCCCGTCGGCCACATAGAATTGGCAGAACATGTGGCACGGCGGCAGCGCCATC 48347 Query 30031 AGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTC 30090 || | || |||||||| || ||| | ||||| | ||| |||||| | Sbjct 48346 TCGCTTAGATCGGCCGGGTTCCACGCCGACAGCACAATGCGGCGGTCCGTCGGGTTGGTT 48287 Query 30091 CTGA---TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGC 30146 | | || || ||| | || ||||| ||||| ||| || | |||||| || Sbjct 48286 CGAAGCTTGTGGATCAC----CTCAGCGAGCTGGTCCACGCCCTGGCCGGTGTAGTCCGC 48231 Query 30147 CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAG 30206 ||||||| |||||| || || || || | ||||||||| ||||| |||||||| || Sbjct 48230 GTGCATGTCCTTGTACTTGGCGCCAAAGTGGCGCCACTGGAAGCCGTATACCGGTCCAAG 48171 Query 30207 GTCTCCCTCTTCCCTGTGCTCGAAGCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30265 || ||| |||| | | | | ||||| | |||||| | | || | || || ||| Sbjct 48170 ATCGCCCACTTCGC-GCGACTGCAGCCCTCGAGTGTCCAGATACTCCCGAGATCCATTGC 48112 Query 30266 CGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGA 30325 ||||||| || | | |||||| ||| | || | | ||| || |||| || Sbjct 48111 CGTCCCAAATGTGGATGTCCTTCTGCTGCAGCGTGTGGGCGCTCGTGTCGCCGCTGATGA 48052 Query 30326 ACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30385 |||||||||||||||| | || | ||| ||||||||||||||||| || | || | Sbjct 48051 ACCACAGCAGCTCCTCGGCCACACCGCGCCAGAAGACCCTCTTGGTCGTCAGCARCGGGA 47992 Query 30386 AC----TGTCCCT 30394 || ||||||| Sbjct 47991 ACACGTTGTCCCT 47979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408433697562944