Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq36271 150 2e-31 seq32329 109 7e-19 seq27878 109 7e-19 seq27877 109 7e-19 seq26115 109 7e-19 >seq36271 Length=16985 Score = 150 bits (166), Expect = 2e-31 Identities = 426/640 (67%), Gaps = 11/640 (2%) Strand=Plus/Minus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| | ||| ||||||| || || | ||||||||| | ||| |||| | | Sbjct 2861 CCCGCAGCAGATGATCATGCGCGTGGCGCTGGGCATCCACAAGACGGACGTTGAGGCCGC 2802 Query 75271 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 75329 || |||| ||||| ||||| || | || | |||| ||||| || || || || | Sbjct 2801 TCTGCAGACGTACGAGCTCATGTCGCAGATGTTT-TTCACGCACGCGACGCCCACGCTGT 2743 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 |||| || || || || | || ||| | || |||||||| | |||| |||| | Sbjct 2742 TCAACGCCGGCACGCCGCGTCCTCAGCTCTCGTCCTGCTTCCTCCTGGCCATGCAGGACG 2683 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 |||| || | || || || | || || | | |||||||| ||||| |||||||| | Sbjct 2682 ACTCGATTGAGGGCATTTACGACACACTGAAGCAGTGTGCGTGTATCTCCAAGTGGGCGG 2623 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACA 75508 | || ||||| || || || || | | || | || | || ||||| || || Sbjct 2622 GCGGGATTGGCATCAGTATGCACAATATCCGTGCGACGAACAGCTAC-ATTCGCGGCACG 2564 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 ||||| || | || || || || ||||| || || ||||||| ||| || || || Sbjct 2563 AATGGCTCCTCCAACGGCATCATCCCCATGCTGCGTGTGTTTAACGACACGGCACGATAC 2504 Query 75569 GTAAATCAAG-CGG-GGCGT-CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 || | || | ||| ||| |||||||| || |||| ||||| |||| || ||||| Sbjct 2503 GTGGACCAGGGCGGCGGCAAGCGCAAGGGATCGTTCGCCATCTACCTGGAGCCCTGGCAC 2444 Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT 75685 ||||| | | |||||||| || | || ||||| || |||| | || | | | Sbjct 2443 GCCGACGTGTTCGAGTTCCTGGACCTGCGGAAGAACCACGGCAACGA-GCTGCACCGCGC 2385 Query 75686 A-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGG 75744 | || || || | | || ||| | || || || ||||||||||| || || | | Sbjct 2384 GCGCGACCTGTTCTACGCGCTCTGGGTGCCGGATCTCTTCATGAAGCGCGTCGAAGCAGA 2325 Query 75745 TGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA-CGCGGTGGGTG 75803 || || ||| || ||||| || || |||| || || |||| ||| || | ||| | Sbjct 2324 CGGCCAGTGGAGCCTCTTCTGCCCCAACGAGGCGCCCGGGCTCTACGAGTGCTG-GGGCG 2266 Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGG 75843 | ||||| || ||||| ||| |||||| || ||||||| Sbjct 2265 ACGAGTTCGAGGCCCTGTACGAAAAGTACGAGAAGGAGGG 2226 >seq32329 Length=12294 Score = 109 bits (120), Expect = 7e-19 Identities = 333/504 (66%), Gaps = 18/504 (4%) Strand=Plus/Plus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAA-GTCTCGCTCCTTCGCCGAGC 65080 ||||||||| | ||||| | || |||| ||| | || ||| || | | | |||| Sbjct 11234 GAAGAAGGCCCAGTGGGCGCTCAAGTGGTGCGACCCGCGCGTGTCG-TCTTACCCGGAGC 11292 Query 65081 GCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTT 65140 |||| | ||||| || ||||||||| ||||||||||| || || |||||| | || | Sbjct 11293 GCCTGCTGGCGTTCGCCGCTGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCGATCT 11352 Query 65141 ATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCC 65200 ||| |||||||||| || || ||||| || || ||||||| || || || || || Sbjct 11353 TCTGGCTGAAGAAGCGCGGGCTGATGCCCGGTCTGAGCTTCTCGAACGAGCTCATCAGCC 11412 Query 65201 GAGATGAGGGTCTCCACCAGGAGTTTGC---CGTGGAGCTCTTCAAGACTTTGCGTAATA 65257 | || ||||| | ||| ||| || || | || | || |||| || || | Sbjct 11413 GTGACGAGGGCATGCACACGGACTTCGCGTGCCTGCTGTACTCCAAG-CT---GGTGA-- 11466 Query 65258 GACCCACTACC-GAAA---CTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAA 65313 || || || || | | ||| || ||| || ||||| | ||| ||| | Sbjct 11467 -ACAAGCTGCCTGAGAGCCGCGTGCACCAGATTGTGCGTGACGCGGTGGTGATCGAGCAC 11525 Query 65314 GGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCC 65373 | |||| | | ||| | || || | || ||||| |||||||| | |||| | Sbjct 11526 GAGTTCGTGTGCGACTCGCTGCCGGTGGAGCTGATCGGCATGAACTCGACGCTCATGTGC 11585 Query 65374 GAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG-GTGCCACCCATTTG 65432 ||||||| |||| |||| |||| ||||| || || |||||| ||| | || | Sbjct 11586 CAGTACATCGAGTTTGTGGCGGACCGTCTGCT-GTACTCGTTGGGCGTGTCCAAGATCTA 11644 Query 65433 GAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTT 65492 |||| ||||| || || |||| ||||| | || || | || |||||||| || Sbjct 11645 CAACGTCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAATTT 11704 Query 65493 CTTTGAGAAGCGAGTTGGGGACTA 65516 ||| |||||||| || || || || Sbjct 11705 CTTCGAGAAGCGCGTGGGCGAGTA 11728 >seq27878 Length=10574 Score = 109 bits (120), Expect = 7e-19 Identities = 333/504 (66%), Gaps = 18/504 (4%) Strand=Plus/Minus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAA-GTCTCGCTCCTTCGCCGAGC 65080 ||||||||| | ||||| | || |||| ||| | || ||| || | | | |||| Sbjct 1061 GAAGAAGGCCCAGTGGGCGCTCAAGTGGTGCGACCCGCGCGTGTCG-TCTTACCCGGAGC 1003 Query 65081 GCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTT 65140 |||| | ||||| || ||||||||| ||||||||||| || || |||||| | || | Sbjct 1002 GCCTGCTGGCGTTCGCCGCTGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCGATCT 943 Query 65141 ATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCC 65200 ||| |||||||||| || || ||||| || || ||||||| || || || || || Sbjct 942 TCTGGCTGAAGAAGCGCGGGCTGATGCCCGGTCTGAGCTTCTCGAACGAGCTCATCAGCC 883 Query 65201 GAGATGAGGGTCTCCACCAGGAGTTTGC---CGTGGAGCTCTTCAAGACTTTGCGTAATA 65257 | || ||||| | ||| ||| || || | || | || |||| || || | Sbjct 882 GTGACGAGGGCATGCACACGGACTTCGCGTGCCTGCTGTACTCCAAG-CT---GGTGA-- 829 Query 65258 GACCCACTACC-GAAA---CTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAA 65313 || || || || | | ||| || ||| || ||||| | ||| ||| | Sbjct 828 -ACAAGCTGCCTGAGAGCCGCGTGCACCAGATTGTGCGTGACGCGGTGGTGATCGAGCAC 770 Query 65314 GGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCC 65373 | |||| | | ||| | || || | || ||||| |||||||| | |||| | Sbjct 769 GAGTTCGTGTGCGACTCGCTGCCGGTGGAGCTGATCGGCATGAACTCGACGCTCATGTGC 710 Query 65374 GAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG-GTGCCACCCATTTG 65432 ||||||| |||| |||| |||| ||||| || || |||||| ||| | || | Sbjct 709 CAGTACATCGAGTTTGTGGCGGACCGTCTGCT-GTACTCGTTGGGCGTGTCCAAGATCTA 651 Query 65433 GAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTT 65492 |||| ||||| || || |||| ||||| | || || | || |||||||| || Sbjct 650 CAACGTCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAATTT 591 Query 65493 CTTTGAGAAGCGAGTTGGGGACTA 65516 ||| |||||||| || || || || Sbjct 590 CTTCGAGAAGCGCGTGGGCGAGTA 567 >seq27877 Length=1900 Score = 109 bits (120), Expect = 7e-19 Identities = 333/504 (66%), Gaps = 18/504 (4%) Strand=Plus/Minus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAA-GTCTCGCTCCTTCGCCGAGC 65080 ||||||||| | ||||| | || |||| ||| | || ||| || | | | |||| Sbjct 1061 GAAGAAGGCCCAGTGGGCGCTCAAGTGGTGCGACCCGCGCGTGTCG-TCTTACCCGGAGC 1003 Query 65081 GCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTT 65140 |||| | ||||| || ||||||||| ||||||||||| || || |||||| | || | Sbjct 1002 GCCTGCTGGCGTTCGCCGCTGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCGATCT 943 Query 65141 ATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCC 65200 ||| |||||||||| || || ||||| || || ||||||| || || || || || Sbjct 942 TCTGGCTGAAGAAGCGCGGGCTGATGCCCGGTCTGAGCTTCTCGAACGAGCTCATCAGCC 883 Query 65201 GAGATGAGGGTCTCCACCAGGAGTTTGC---CGTGGAGCTCTTCAAGACTTTGCGTAATA 65257 | || ||||| | ||| ||| || || | || | || |||| || || | Sbjct 882 GTGACGAGGGCATGCACACGGACTTCGCGTGCCTGCTGTACTCCAAG-CT---GGTGA-- 829 Query 65258 GACCCACTACC-GAAA---CTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAA 65313 || || || || | | ||| || ||| || ||||| | ||| ||| | Sbjct 828 -ACAAGCTGCCTGAGAGCCGCGTGCACCAGATTGTGCGTGACGCGGTGGTGATCGAGCAC 770 Query 65314 GGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCC 65373 | |||| | | ||| | || || | || ||||| |||||||| | |||| | Sbjct 769 GAGTTCGTGTGCGACTCGCTGCCGGTGGAGCTGATCGGCATGAACTCGACGCTCATGTGC 710 Query 65374 GAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG-GTGCCACCCATTTG 65432 ||||||| |||| |||| |||| ||||| || || |||||| ||| | || | Sbjct 709 CAGTACATCGAGTTTGTGGCGGACCGTCTGCT-GTACTCGTTGGGCGTGTCCAAGATCTA 651 Query 65433 GAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTT 65492 |||| ||||| || || |||| ||||| | || || | || |||||||| || Sbjct 650 CAACGTCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAATTT 591 Query 65493 CTTTGAGAAGCGAGTTGGGGACTA 65516 ||| |||||||| || || || || Sbjct 590 CTTCGAGAAGCGCGTGGGCGAGTA 567 >seq26115 Length=10575 Score = 109 bits (120), Expect = 7e-19 Identities = 333/504 (66%), Gaps = 18/504 (4%) Strand=Plus/Plus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAA-GTCTCGCTCCTTCGCCGAGC 65080 ||||||||| | ||||| | || |||| ||| | || ||| || | | | |||| Sbjct 9515 GAAGAAGGCCCAGTGGGCGCTCAAGTGGTGCGACCCGCGCGTGTCG-TCTTACCCGGAGC 9573 Query 65081 GCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTT 65140 |||| | ||||| || ||||||||| ||||||||||| || || |||||| | || | Sbjct 9574 GCCTGCTGGCGTTCGCCGCTGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCGATCT 9633 Query 65141 ATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCC 65200 ||| |||||||||| || || ||||| || || ||||||| || || || || || Sbjct 9634 TCTGGCTGAAGAAGCGCGGGCTGATGCCCGGTCTGAGCTTCTCGAACGAGCTCATCAGCC 9693 Query 65201 GAGATGAGGGTCTCCACCAGGAGTTTGC---CGTGGAGCTCTTCAAGACTTTGCGTAATA 65257 | || ||||| | ||| ||| || || | || | || |||| || || | Sbjct 9694 GTGACGAGGGCATGCACACGGACTTCGCGTGCCTGCTGTACTCCAAG-CT---GGTGA-- 9747 Query 65258 GACCCACTACC-GAAA---CTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAA 65313 || || || || | | ||| || ||| || ||||| | ||| ||| | Sbjct 9748 -ACAAGCTGCCTGAGAGCCGCGTGCACCAGATTGTGCGTGACGCGGTGGTGATCGAGCAC 9806 Query 65314 GGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCC 65373 | |||| | | ||| | || || | || ||||| |||||||| | |||| | Sbjct 9807 GAGTTCGTGTGCGACTCGCTGCCGGTGGAGCTGATCGGCATGAACTCGACGCTCATGTGC 9866 Query 65374 GAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG-GTGCCACCCATTTG 65432 ||||||| |||| |||| |||| ||||| || || |||||| ||| | || | Sbjct 9867 CAGTACATCGAGTTTGTGGCGGACCGTCTGCT-GTACTCGTTGGGCGTGTCCAAGATCTA 9925 Query 65433 GAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTT 65492 |||| ||||| || || |||| ||||| | || || | || |||||||| || Sbjct 9926 CAACGTCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAATTT 9985 Query 65493 CTTTGAGAAGCGAGTTGGGGACTA 65516 ||| |||||||| || || || || Sbjct 9986 CTTCGAGAAGCGCGTGGGCGAGTA 10009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596294223472640