Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_021306.1 Length=75736 Score E Sequences producing significant alignments: (Bits) Value seq36741 138 5e-28 >seq36741 Length=22457 Score = 138 bits (152), Expect = 5e-28 Identities = 327/492 (66%), Gaps = 9/492 (2%) Strand=Plus/Minus Query 65227 CATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGA 65286 ||||||||| || || || | ||| || | ||||||||||| | ||||| ||| |||| Sbjct 15244 CATCGACGCGGAACATGCCATTGACGCTCACTACGCCAAGGCTTTGGGTGTCGACATCGA 15185 Query 65287 CAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCT 65346 | || || ||||||||| | ||||| | || |||||||||| || || Sbjct 15184 CGCGCTGTACGTCTCGCAGCCGGACTCAGGCGAAGAAGCTCTGGAGATCGCAGATACGCT 15125 Query 65347 CGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCG 65406 | || ||| || | | | | | || || | || |||||| || || ||||| || Sbjct 15124 CATCCGGTCGGGAGCGGTAGACCTTGTGGTGCTGGATAGTGTGGCTGCGCTTGTGCCACG 15065 Query 65407 CGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTC 65466 || ||||| || ||||| || || ||| || ||| ||||| ||||| |||||| Sbjct 15064 TGCAGAGCTTGAGGGCGAGATGGGAGACCAGCAGATCGCGCTGCAGGCGCGACTCATGAG 15005 Query 65467 GCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTG 65523 ||||| | ||||||||||| ||| | | |||| | || ||| | | ||| Sbjct 15004 CCAGGCGCTTCGCAAGCTCACGGGCTCGCTGTCCAAGTCGAACTGCACCATTA---TCTT 14948 Query 65524 GGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCAC 65583 |||||||| | || ||||| | |||| | | || || | ||| || | Sbjct 14947 CCTCAACCAGATCCGACAGAAGGTGGGCATCAT---CTTTGGATCTCCCGAAGTTACGTC 14891 Query 65584 GGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCAC 65643 |||||||| ||| ||| | | |||||||||||| || |||| |||| |||| | | Sbjct 14890 GGGCGGCACGGCGTTGCGCTACTACGCCTCAGTGCGGCTGGACATCCGCCGCAAAACGGC 14831 Query 65644 CGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAA 65703 ||||| ||||| | || ||||| || || ||| || || | ||||||||| Sbjct 14830 AATTAAGGAGGGCGACGTGGTCGTCGGTAATGAGACGACGGTCAAAGTTGCCAAGAACAA 14771 Query 65704 GCTGGCCCCGCC 65715 ||||||| |||| Sbjct 14770 GCTGGCCTCGCC 14759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242121381786176