Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq27875 132 1e-25 seq30005 93.3 1e-13 >seq27875 Length=19760 Score = 132 bits (146), Expect = 1e-25 Identities = 202/280 (72%), Gaps = 12/280 (4%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 |||||||| || || || || | || || ||||| |||||||| ||||| ||||| Sbjct 12297 CGACGCTGGATGTAGCCCGTCTCGGCCGTCTTCACAGCCGTATCAATCAGACCTTCACGA 12238 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTC 302711 |||||||| || |||||||| | ||||| || ||| || ||| | | ||| |||| Sbjct 12237 CCACCCATTGCGTGGAAGAAGAACTCTTGTGG-CGTCAGACCCTTCAGGTACGAGTTCTC 12179 Query 302712 AACGAAACCACGCGCCTCGGG--CGA-ATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCT 302768 ||||||||||| ||||| | | |||||| |||| |||| ||||| || | Sbjct 12178 GACGAAACCACGACTTTCGGGGCCAAGATCGTC---CTTGCCGTAGTGCGGCAGCGTACG 12122 Query 302769 GTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAAT 302828 || | ||||||| |||||||||||||| || || |||||||| |||| || | ||| Sbjct 12121 GTGGTTGAAGCCGTACGGGATACGCTTTCCTTCGACATTCTGCTGCCCCACACAGGCAAT 12062 Query 302829 CATCTGCGAAATATTTAAATCACTG--CCCTTGGAGCCAG 302866 |||||||| || || ||| | | ||||| ||||||| Sbjct 12061 AATCTGCGAGATGTT--AATGAACGAACCCTTCGAGCCAG 12024 >seq30005 Length=11534 Score = 93.3 bits (102), Expect = 1e-13 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | || || || ||||||||||| ||||| ||| | || || || ||||| Sbjct 641 CTTGATGGCCGAAGCCAGGGCTCCAAGCGAGTCGCGGTCAAGGTAGTTCGTCGGCTCGTC 700 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 || | || | |||||| | || |||||| || |||||||| || ||||| |||||||| Sbjct 701 CAGCACCAGGATGTGCGGGTTCAGCCACATGGCAGCAGCCAGCACGACCTTCACCTTCTG 760 Query 354123 TCCGCCTGATAGTGCGTGAATCTTGGAATATGTACCGAACTGCGATTCAAGGTTGAAATG 354182 || || || || | | || || | |||||||||| | | ||| ||| Sbjct 761 GCCACCGGACAGACCACGCATGCGCGAGTGGGTACCGAACTCGGCGCCCAGGCCGAAGCA 820 Query 354183 GTCGAGATGTTTCTGTACG 354201 |||||| || ||||| ||| Sbjct 821 GTCGAGGTGCTTCTGCACG 839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471121224220736