Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq36271 118 1e-21 seq30472 111 1e-19 seq32285 105 6e-18 seq35386 91.5 1e-13 seq12976 91.5 1e-13 >seq36271 Length=16985 Score = 118 bits (130), Expect = 1e-21 Identities = 892/1419 (63%), Gaps = 78/1419 (5%) Strand=Plus/Plus Query 138540 GTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGT 138599 ||| |||||| ||| | ||||| | || |||||||| ||||| || |||||||| | Sbjct 1481 GTACATGTTGGACGTGTACGGCTCGATGGACTCGTTGTTACCCAGGATTTGAGCCGTCGA 1540 Query 138600 CGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATT-CGTT 138658 || |||||||| ||| || | || || || || | ||||| ||| || |||| Sbjct 1541 GGCCGTCGGCATCGGCGCGACGAGCAGCGAGTTGCGGATGCCGTG---CTTAATCACGTT 1597 Query 138659 C--CTTGAGCGACGACCAGTCCCACA------AATCGCTAGGTTTTTTGTTCCACATATC 138710 | |||||||| | ||||||||||| |||| ||| | | |||||| || Sbjct 1598 CTGCTTGAGCGTGGCCCAGTCCCACAGCCCCGAATC---AGGGGTGACGCCCCACATGTC 1654 Query 138711 GTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTC 138770 | |||| || || ||| || || ||| ||| | | ||| ||||| || | ||| Sbjct 1655 GAACTGGAAGATGCCCTTGCTGGCAGGAGAGCCCTGGAACGTCTCGTACGGGCCCAGCTC 1714 Query 138771 TTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTG 138830 | || | ||| | || ||| | | | | |||||||| || || |||| || Sbjct 1715 CTTGGCGATCTCCATCGACGTCTCCATGGAAGCGTAGTAAATGGTCTCAAAGATCTTCTT 1774 Query 138831 ATTGAGCAATCGGGCCTCGGCGCTCTCGTACGG------CATGCGGAGCATCGTGAACGC 138884 |||||| ||||| | | ||||||| ||| |||| ||| ||||||| Sbjct 1775 GTTGAGCTCGCGGGCTTGCGGGCTCTCGAACGCGTAGTCCATGAGGA------TGAACGC 1828 Query 138885 GTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGC 138944 |||||| || || || ||||| | ||||| ||||| ||||||| || |||| | || Sbjct 1829 GTCGGCGAGACCCTGAACGCCGATACCGACGGGGCGGTGGCGCATGTTGGACG--TGCGC 1886 Query 138945 GGCTTCGATA--GGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACC 139002 | || || | || || ||||| || || |||| ||||| | || || |||||| Sbjct 1887 GCCTCCGCCACGGGGTAGTAGTTGACGTCAATGACCTTGTTCAGGTTGCGGGTCACCACC 1946 Query 139003 TTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGT---CGTCGACGACG 139059 | |||| || ||| || | |||| |||| || || | | Sbjct 1947 T---TCGTCACCT-----CGTACA-----GCTTGTGGTA--GTTGAACACGCCGCCCTCT 1991 Query 139060 TCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGG-GTC 139118 || || || ||| | | || || | ||||||||| ||||| ||||| || | | Sbjct 1992 TCCACGAACTTGGGCAGCGCCACGGACGCCAGGTTGCACACGGCCACCTCGTCAGGCGAC 2051 Query 139119 GCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTG 139178 | ||| || | | || ||||| || || | |||||| || | || || || Sbjct 2052 GA-GTACTCCATGACCTCACAGCACAAGTTGCTCGAGCGGATCGTGCCCAGGTTCTGCTG 2110 Query 139179 ATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTG 139238 || || ||||| | || ||| | ||||| |||| ||| || || | || Sbjct 2111 GTTCGACTTGCGGTTGGCCGAGTCCTTGAACAGCATGAACGGCACGCCCGTCTCAATCTG 2170 Query 139239 TGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTAT----TTGACGCACGTAAAGTT 139294 | || | ||| | ||| | | |||| || ||| || || || Sbjct 2171 GGCGTCCAGGATGGAGAACCACAGCTGCTGCGCTTTGATCGTCTTG-CGAGCGC---GTC 2226 Query 139295 CGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGA 139353 | || ||||||||||||||| || | ||||| |||| | || || || | || Sbjct 2227 CCTCCTTCTCGTACTTTTCGTACAGGGCCTCGAACTCGT-CGCCCCAGCACTCGTAGAGC 2285 Query 139354 TCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATG 139413 || | || || || || | ||| ||| ||||| || | ||||||| ||||| Sbjct 2286 CCGGGCGCCTCGTTGGGGCAGAAGAGGCTCCACTGGCCGTCTGCTTCGACGCGCTTCATG 2345 Query 139414 AACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTT-ATCTTCCGAACC 139472 || |||||||| | ||| | ||| | | || |||||||| | | || || | Sbjct 2346 AAGAGATCCGGCACCCAGAGCGCGTAGAACAGGTCGCGCGCGCGGTGCAGCT--CGTTGC 2403 Query 139473 CATGTTACGTTT-CATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGA 139531 | || | | | || || ||||| || || ||||| |||||||| || ||||| |||| Sbjct 2404 CGTGGTTCTTCCGCAGGTCCAGGAACTCGAACACGTCGGCGTGCCAGGGCTCCAGGTAGA 2463 Query 139532 TGGCCATTGCGCCTTTCCGTTTGCCACCT---TGATCGACGTGTCGTACAGCATTATTGA 139588 |||| | | || || || ||||| || || || |||| |||| | | | || | Sbjct 2464 TGGCGAACGATCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTATCGTGCCGTGTCGTTAA 2523 Query 139589 ATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGT 139648 | || |||| ||| || | ||| | | | || || |||| || ||| |||| Sbjct 2524 ACACACGCAGCATGGGGATGATGCCGTTGGAGGAGCCATTCGTGCCGCGAATGTAGCTGT 2583 Query 139649 TGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAA 139708 | || |||| | || | | ||||||| || ||||| | | ||||| || | | Sbjct 2584 TCGTCGCACGGATATTGTGCATACTGATGCCAATCCCGCCCGCCCACTTGGAGAT--ACA 2641 Query 139709 CGCAATC-GCGTAA-TGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAG 139766 |||| | || | | ||| ||||| || || || |||||||||||| | | || Sbjct 2642 CGCACACTGCTTCAGTGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCCAGGAG 2701 Query 139767 AAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTG 139826 ||||| ||||| || || || | ||||||||| ||||| || || ||||||| Sbjct 2702 GAAGCAGGACGAGAGCTGAGGACGCGGCGTGCCGGCGTTGAACAGCGTGGGCGTCGCGTG 2761 Query 139827 CGTG---AACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCT 139883 |||| ||||| || |||||| | |||||||| | | ||| | ||| ||| | Sbjct 2762 CGTGAAAAACATCTG---CGACATGAGCTCGTACGTCTGCAGAGCGGCCTCAACGTCCGT 2818 Query 139884 TCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922 |||||| || | | || ||||| | ||| || || Sbjct 2819 CTTGTGGATGCCCAGCGCCACGCGCATGATCATCTGCTG 2857 >seq30472 Length=20972 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || ||||| || || || || || |||||||| || || | | Sbjct 12450 GATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCTTC 12391 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || || || |||||||| || ||||| || || || || || Sbjct 12390 GGACTCGATCGATAATGTCAAGCAGAAAATCCAAGATAAGGAAGGCATCCCGCCTGACCA 12331 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| |||| || ||||| || ||||||||||| | | || || || || Sbjct 12330 GCAGCGTCTGATTTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGCTGAGCGACTACAA 12271 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| || || | ||||||||| |||| ||||||| ||| Sbjct 12270 CATCCAGAAGGAGTCAACGTTGCACTTGGTGCTGCGTCTGCGCGGTGGC 12222 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||||| || || || || || ||||| || || || | | Sbjct 12221 ATGCAGATTTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTTGACGTGGAGCCTTCG 12162 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || || ||||||||||| |||||||| || || || || Sbjct 12161 GACTCGATCGACAACGTCAAGCAGAAAATCCAAGACAAGGAAGGAATCCCGCCTGACCAG 12102 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || ||||||||||| | | | || || ||| Sbjct 12101 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGCTAAGCGACTACAAC 12042 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || | ||||||||| |||| ||||||| ||| Sbjct 12041 ATCCAGAAGGAGTCAACGTTGCACTTGGTGCTGCGTCTGCGCGGTGGC 11994 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || |||||||| || || | | Sbjct 11993 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCTTCG 11934 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || || ||||||||||| ||||| || || || || || Sbjct 11933 GACTCGATCGACAATGTCAAGCAGAAAATCCAAGACAAGGAAGGCATCCCACCTGACCAG 11874 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || ||||||||||| | | | || || ||| Sbjct 11873 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGCTAAGCGACTACAAC 11814 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || | ||||||||| |||| Sbjct 11813 ATCCAGAAGGAGTCAACGTTGCACTTGGTGCTGCG 11779 >seq32285 Length=18199 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || | || || || || || ||||| || || || | Sbjct 8579 ACCATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACGCTAGATGTGGAGCCG 8520 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||| | | || | || || || || ||||||||||| || || || || || || Sbjct 8519 TCGGACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGAC 8460 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || ||| ||||||| ||||| || ||||||||||| | | | || || || Sbjct 8459 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGCACGCTGAGCGACTAC 8400 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| || ||||| ||| ||||| |||| |||| || ||| Sbjct 8399 AACATCCAGAAGGAGTCTACACTGCACCTGGTGCTGCGTCTGCGTGGCGGC 8349 Score = 89.7 bits (98), Expect = 5e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || || || ||||||||||| || || || || || || || || ||| ||||||| Sbjct 7817 GTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTGATCTTC 7758 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 ||||| || |||||||||||| | | || || || ||||| || ||||| || Sbjct 7757 GCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCT 7698 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||| ||||| |||| |||| || || Sbjct 7697 ACACTGCACCTGGTGCTGCGTCTGCGTGGCGG 7666 >seq35386 Length=12911 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || |||||||| || || | | Sbjct 4558 ATGCAGATCTTTGTGAAAACCCTGACGGGAAAGACCATCACGCTCGATGTGGAGCCGTCG 4617 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| ||||| || || || || || Sbjct 4618 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 4677 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || ||||||| ||||| || ||||| ||||| Sbjct 4678 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGA 4712 >seq12976 Length=6227 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || |||||||| || || | | Sbjct 3501 ATGCAGATCTTTGTGAAAACCCTGACGGGAAAGACCATCACGCTCGATGTGGAGCCGTCG 3560 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| ||||| || || || || || Sbjct 3561 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 3620 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || ||||||| ||||| || ||||| ||||| Sbjct 3621 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGA 3655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449689927267840