Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_022085.1 Length=76483 Score E Sequences producing significant alignments: (Bits) Value seq36741 138 6e-28 >seq36741 Length=22457 Score = 138 bits (152), Expect = 6e-28 Identities = 327/492 (66%), Gaps = 9/492 (2%) Strand=Plus/Minus Query 66309 CATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGA 66368 ||||||||| || || || | ||| || | ||||||||||| | ||||| ||| |||| Sbjct 15244 CATCGACGCGGAACATGCCATTGACGCTCACTACGCCAAGGCTTTGGGTGTCGACATCGA 15185 Query 66369 CAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCT 66428 | || || ||||||||| | ||||| | || |||||||||| || || Sbjct 15184 CGCGCTGTACGTCTCGCAGCCGGACTCAGGCGAAGAAGCTCTGGAGATCGCAGATACGCT 15125 Query 66429 CGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCG 66488 | || ||| || | | | | | || || | || |||||| || || ||||| || Sbjct 15124 CATCCGGTCGGGAGCGGTAGACCTTGTGGTGCTGGATAGTGTGGCTGCGCTTGTGCCACG 15065 Query 66489 CGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTC 66548 || ||||| || ||||| || || ||| || ||| ||||| ||||| |||||| Sbjct 15064 TGCAGAGCTTGAGGGCGAGATGGGAGACCAGCAGATCGCGCTGCAGGCGCGACTCATGAG 15005 Query 66549 GCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTG 66605 ||||| | ||||||||||| ||| | | |||| | || ||| | | ||| Sbjct 15004 CCAGGCGCTTCGCAAGCTCACGGGCTCGCTGTCCAAGTCGAACTGCACCATTA---TCTT 14948 Query 66606 GGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCAC 66665 |||||||| | || ||||| | |||| | | || || | ||| || | Sbjct 14947 CCTCAACCAGATCCGACAGAAGGTGGGCATCAT---CTTTGGATCTCCCGAAGTTACGTC 14891 Query 66666 GGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCAC 66725 |||||||| ||| ||| | | |||||||||||| || |||| |||| |||| | | Sbjct 14890 GGGCGGCACGGCGTTGCGCTACTACGCCTCAGTGCGGCTGGACATCCGCCGCAAAACGGC 14831 Query 66726 CGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAA 66785 ||||| ||||| | || ||||| || || ||| || || | ||||||||| Sbjct 14830 AATTAAGGAGGGCGACGTGGTCGTCGGTAATGAGACGACGGTCAAAGTTGCCAAGAACAA 14771 Query 66786 GCTGGCCCCGCC 66797 ||||||| |||| Sbjct 14770 GCTGGCCTCGCC 14759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 244510705962752