Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq30472 104 2e-17 seq35386 100 2e-16 seq12976 100 2e-16 seq32285 98.7 7e-16 >seq30472 Length=20972 Score = 104 bits (114), Expect = 2e-17 Identities = 169/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | || ||| | |||||| || | || ||| || || ||| Sbjct 12211 AAAATCTGCATGCCACCGCGCAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATG 12270 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| ||| || || || |||| |||| || || ||||| ||||||| ||||||| Sbjct 12271 TTGTAGTCGCTCAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGC 12330 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || |||| | ||||| || || |||||||| || | ||| || | | ||| Sbjct 12331 TGGTCAGGCGGGATGCCTTCCTTATCTTGGATTTTCTGCTTGA-CATTATCGATCGAGTC 12389 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||||||| | ||||||||| || || || | ||| || || ||||||||||| Sbjct 12390 CGAAGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 12449 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | |||||| || | || ||| || || |||||||| ||| || || || | Sbjct 11778 ACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTTAGCGTACGACC 11837 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| |||| || || ||||| || |||| ||||||||| || | || | ||||| || Sbjct 11838 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCTTCCTT 11897 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| |||||||| || | ||| ||| | | ||| | |||||||| | ||||| Sbjct 11898 GTCTTGGATTTTCTGCTTGA-CATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGA 11956 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || || | ||| || || ||||||||||| Sbjct 11957 TCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 11993 >seq35386 Length=12911 Score = 100 bits (110), Expect = 2e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621 || || |||||||| || ||||| ||||| |||| || | || || ||||| || ||| Sbjct 4745 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 4686 Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 | |||||||| || |||| | ||||| ||||| |||||||| || | ||| ||| Sbjct 4685 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTGTC 4627 Query 33682 ACGG-TGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | | |||| | ||||| || | |||||| || || || || | ||||| ||||| Sbjct 4626 AATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACAAA 4567 Query 33741 GATCTGCAT 33749 ||||||||| Sbjct 4566 GATCTGCAT 4558 >seq12976 Length=6227 Score = 100 bits (110), Expect = 2e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621 || || |||||||| || ||||| ||||| |||| || | || || ||||| || ||| Sbjct 3688 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 3629 Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 | |||||||| || |||| | ||||| ||||| |||||||| || | ||| ||| Sbjct 3628 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTGTC 3570 Query 33682 ACGG-TGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | | |||| | ||||| || | |||||| || || || || | ||||| ||||| Sbjct 3569 AATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACAAA 3510 Query 33741 GATCTGCAT 33749 ||||||||| Sbjct 3509 GATCTGCAT 3501 >seq32285 Length=18199 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | ||||| || || || ||| || || |||||||| ||| Sbjct 8350 CCGCCACGCAGACGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 8409 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || || ||||| || |||| ||||||||| || |||| Sbjct 8410 AGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 8469 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| |||||||| |||| | | ||| | | ||| | ||||| Sbjct 8470 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCAC 8528 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||||||| || || || || || || || ||||||||||| || Sbjct 8529 ATCTAGCGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATGGT 8579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328556063477760