Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq30472 89.7 1e-12 seq32285 86.0 1e-11 >seq30472 Length=20972 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || || |||||||| | || ||||| ||| ||| | |||| Sbjct 12206 AAGACGCTGACGGGCAAGACGATCACGCTTGACGTGGAGCCTTCGGACTCGATCGACAAC 12147 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || ||||| || |||||||| ||| ||| || | || |||||| Sbjct 12146 GTCAAGCAGAAAATCCAAGACAAGGAAGGAATCCCGCCTGACCAGCAGCGTCTGATCTTC 12087 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || | ||| |||||| ||||||| ||||| Sbjct 12086 GCCGGCAAGCAGCTGGAGGACGGTCGTACGCTAAGCGACTACAACATCCAGAAGGAGTCA 12027 Query 206365 AC 206366 || Sbjct 12026 AC 12025 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || || |||||||| | || ||||| ||| ||| | |||| Sbjct 11978 AAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCTTCGGACTCGATCGACAAT 11919 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || ||||| || ||||| || || ||| || | || |||||| Sbjct 11918 GTCAAGCAGAAAATCCAAGACAAGGAAGGCATCCCACCTGACCAGCAGCGTCTGATCTTC 11859 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || | ||| |||||| ||||||| ||||| Sbjct 11858 GCCGGCAAGCAGCTGGAGGACGGTCGTACGCTAAGCGACTACAACATCCAGAAGGAGTCA 11799 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || | ||| | || || | ||||| Sbjct 11798 ACGTTGCACTTGGTGCTGCGTCTTCG 11773 >seq32285 Length=18199 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || |||||||| | || ||||| || ||| | |||| || ||||| Sbjct 8552 ACGGGCAAGACGATCACGCTAGATGTGGAGCCGTCGGACTCGATCGACAACGTGAAGCAG 8493 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || || ||||| || || || || ||| ||| || | || ||||||||||| ||| Sbjct 8492 AAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAG 8433 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| || || | || || ||| |||||| ||||||| |||||||| || ||| Sbjct 8432 CAGCTGGAGGACGGGCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCTACACTGCAC 8373 Query 206374 CTTGT 206378 || || Sbjct 8372 CTGGT 8368 Score = 84.2 bits (92), Expect = 5e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || ||||| || || || || ||| ||| || | || |||||| Sbjct 7817 GTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTGATCTTC 7758 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | || || ||| |||||| ||||||| |||||| Sbjct 7757 GCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCT 7698 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 7697 ACACTGCACCTGGT 7684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181261633306688