Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq36271 165 8e-36 seq30472 111 1e-19 seq32285 105 6e-18 >seq36271 Length=16985 Score = 165 bits (182), Expect = 8e-36 Identities = 616/953 (65%), Gaps = 17/953 (2%) Strand=Plus/Plus Query 147466 GACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCA 147524 |||||||| ||||| |||||| ||| || |||| || ||||| || || || ||| Sbjct 2016 GACGCCAGGTTGCACACGGCCACCTCGTCAGGCGACGA-GTACTCCATGACCTCACAGCA 2074 Query 147525 CAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTC 147584 || |||||| | || |||| || ||||| || || || ||| || ||| Sbjct 2075 CAAGTTGCTCGAGCGGATCGTGCCCAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGAGTC 2134 Query 147585 TTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT--AAACCTATGC 147642 ||||| |||||| |||| |||| ||||| | || | || | ||| | | | | | Sbjct 2135 CTTGAACAGCATGAACGGCACGCCCGTCTCAATCTGGGCGTCCAGGATGGAGAACCA--C 2192 Query 147643 AGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAAC 147702 || | ||||||| | | || ||| ||| ||||| || |||||| ||||||| Sbjct 2193 AGCTGCTGCGCTTTGATCGTCTTGCGAGCGCGTCCCTCCTTCTCGTACTTTTCGTACAGG 2252 Query 147703 CGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGC 147762 ||| ||||||||||| |||| ||| || ||||| || | || || | || Sbjct 2253 GCCTCGAACTCGTCGCCCCAGCACTCGTAGAGCCCGGGCGCCTCGTTGGGGCAGAAGAGG 2312 Query 147763 GACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTAC 147822 |||| | |||| || | ||||| ||| || |||||||||||||| |||||||| Sbjct 2313 CTCCACTGGCCGTCTGCTTCGACGCGCTTCATGAAGAGATCCGGCACCCAGAGCGCGTAG 2372 Query 147823 ATAAGAT--CGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAAT-TAAGCACG 147879 | || | ||||||| |||| |||| ||| ||| || | | | || Sbjct 2373 AACAGGTCGCGCGCGCGGTGCA--GCTCGTTGCCGTGGTTCTTCCGCAGGTCCAGGAACT 2430 Query 147880 CTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTT---T 147936 | | | | ||||||||||||||| || | ||||| ||| | || || || ||||| Sbjct 2431 CGA-ACACGTCGGCGTGCCAGGGCTCCAGGTAGATGGCGAACGATCCCTTGCGCTTGCCG 2489 Query 147937 CCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCG 147996 ||||||||||| || | || || ||| ||||||||| |||| |||||| | |||| Sbjct 2490 CCGCCCTGGTCCACGTATCGTGCCGTGTCGTTAAACACACGCAGCATGGGGATGATGCCG 2549 Query 147997 CTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTA 148056 | | | ||| || ||| || | |||| || || | | ||||| | Sbjct 2550 TTGGAGGAGCCATTCGTGCCGCGAATGTAGCTGTTCGTCGCACGGATATTGTGCATACTG 2609 Query 148057 ACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATG 148116 | |||||| ||||| | |||| || || || || | || ||| ||| ||| Sbjct 2610 ATGCCAATCCCGCCCGCCCACTTGGAGATACACGCACACTGCTTCAGTGTGTCGTAAATG 2669 Query 148117 CCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGC 148176 || || || ||||| | | | | || | || || || | | || ||| | || Sbjct 2670 CCCTCAATCGAGTCGTCCTGCATGGCCAGGAGGAAGCAGGACGAGAGCTGAGGACGCGGC 2729 Query 148177 GTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGA 148236 || || || ||| || ||||| |||||||||| || || | || ||| | Sbjct 2730 GTGCCGGCGTTGAACAGCGTGGGCGTCGCGTGCGTGAAAAACATCTGCGACATGAGCTCG 2789 Query 148237 TACGTCTCAATAGCGTCTTCGATGT-CGTCGCCGTGAATGCCCAGCGCGACGCGCATGAG 148295 ||||||| | |||| | || | || |||| ||| ||||||||||| |||||||||| Sbjct 2790 TACGTCTGCAGAGCGGCCTCAACGTCCGTC-TTGTGGATGCCCAGCGCCACGCGCATGAT 2848 Query 148296 CATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAG 148355 ||| ||||| || || || | || | ||||| || || || || ||||| Sbjct 2849 CATCTGCTGCGGGCGCTCCACGACCTTCCCGTTGACGCGGAAGAGGTAGCCTCGCTCGAG 2908 Query 148356 GGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 || ||| | || ||||| | ||| || || || | |||| |||||||| Sbjct 2909 CGTCTTGAAGCCGAAGTAGTCGTACTCGAAGTCCCGGTCGTGGATGATGGCCG 2961 >seq30472 Length=20972 Score = 111 bits (122), Expect = 1e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| ||||| || | ||||||| || || |||||||||||||||| ||| Sbjct 12229 CGCAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTA 12288 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || || || ||||| || |||| | || |||||||| || || || || |||||| Sbjct 12289 CGACCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGCGGGATGCCT 12348 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || ||||| ||||| || || | | || | | || | |||||||| |||| | Sbjct 12349 TCCTTATCTTGGATTTTCTGCTTGACATTATCGATCGAGTCCGAAGGCTCCACGTCGAGC 12408 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || || ||||| || || | ||| |||||||| Sbjct 12409 GTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 12449 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | ||||||| || || |||||||||||||| | ||||| Sbjct 11779 CGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTTAGCGTACGACCG 11838 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || |||| |||| |||||||| || || || || |||||||| || Sbjct 11839 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCTTCCTTG 11898 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || || | | || | | || | |||||||| |||| ||| | | Sbjct 11899 TCTTGGATTTTCTGCTTGACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATC 11958 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || ||||| || || | ||| ||||||||| Sbjct 11959 GTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 11994 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| ||||| || | ||||||| || || |||||||||||||| | ||| Sbjct 12001 CGCAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTTAGCGTA 12060 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || || || ||||| || |||| |||| |||||||| || || || || || ||| Sbjct 12061 CGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCT 12120 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || ||||| || || | | || | | || | |||||||| || | | Sbjct 12121 TCCTTGTCTTGGATTTTCTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCAAGC 12180 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||| || || ||||| || || | ||||||||||||| Sbjct 12181 GTGATCGTCTTGCCCGTCAGCGTCTTCACGAAAATCTGCATG 12222 >seq32285 Length=18199 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 8355 ACGCAGACGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 8414 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| || || ||||| || |||| |||| |||||||| || || || || ||||| Sbjct 8415 GCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCC 8474 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||||| || |||| | || | | || | ||||||||| || | Sbjct 8475 CTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACATCTAG 8534 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | ||| || || |||| ||| || | ||| ||||||||| Sbjct 8535 CGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATG 8577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476391196270080