Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_025963.1 Length=139981 Score E Sequences producing significant alignments: (Bits) Value seq36590 84.2 2e-11 >seq36590 Length=19788 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 5347 ATGAGCTGCGCCACGCGGTCGCCTCGCCGCACCACGAAGGTCTCTTGGCCGA--AGTTGA 5404 || ||||||||||||||||| || ||| || ||| ||| || |||||| ||||| Sbjct 15206 ATAAGCTGCGCCACGCGGTCCCCGCGCTTGACGGGGAA-GTC-CTCGGCCGAGTGGTTGA 15263 Query 5405 AGAGCACCACTCCCAGGTTCCCTCGGAAGTCCGGGTCCACGACGCCCGCTCCCACATCCA 5464 | || | || |||| ||| || ||| |||| | ||| | |||||||| ||| || | Sbjct 15264 ACAGGATGACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACGCCCGCGCCCGTGTCGA 15323 Query 5465 CGAAGTTGTTTACCGCGAGACCGGACCTCGGCGCCACGCGACCGTAGCAGCC 5516 ||| || || | ||| | || || | ||||||||| || |||||||||| Sbjct 15324 TGAACTTCTTGAGCGCCAACCCAGAGCGCGGCGCCACACGGGCGTAGCAGCC 15375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447604490350080