Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq36228 318 7e-82 seq27802 82.4 9e-11 >seq36228 Length=63081 Score = 318 bits (352), Expect = 7e-82 Identities = 498/702 (71%), Gaps = 15/702 (2%) Strand=Plus/Minus Query 146877 GAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTT 146936 |||| | ||||| || || || | | | ||||| | | || |||||||||||||| Sbjct 48617 GAGCGTCGGGAATGGGCGAGGAGTTCGCGAAAGCTGCTTCTGAAGCGGCTCCACGTGGTT 48558 Query 146937 GAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCAC 146996 ||||| ||||||||||| || | ||| | || || |||||||| | ||| ||| Sbjct 48557 CAGGTACACGTGCGCGTCGCCGATAACGTGAATGAAATCTCCCGGCTTCAATCCGACCAC 48498 Query 146997 GTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCC 147056 || || |||| || ||||| | ||||||||| ||||||||||| || || || || Sbjct 48497 CTGCGCTACCAGCCGCGTAAGCAGTGCGTAGCTGGCAATGTTGAAGGGCACTCCGAGCCC 48438 Query 147057 CATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTG 147116 |||||| |||||| |||||||| ||||||||| ||||||||||||||||| || || || Sbjct 48437 CATGTCGGCCGACCGCTGGTACATCTGGCACGACAGCTCCCCGTCGGCCACATAGAATTG 48378 Query 147117 GCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGA 147176 ||| | ||||||||||||||||||||||| || || || || |||||||| ||||| Sbjct 48377 GCAGAACATGTGGCACGGCGGCAGCGCCATCTCGCTTAGATCGGCCGGGTTCCACGCCGA 48318 Query 147177 GACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACC-CACCTCAGCT 147235 | ||| | || | | | ||||| | || || | ||| ||| || | |||| Sbjct 48317 CAGCACAATGCGGCGGTCCGTCGGGTTGGTTCGAAGCTTGTGGATCACCTCAGC-GAGCT 48259 Query 147236 GGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACGTACCTGGCCCCAAAGTGC 147294 |||||||||||||||| ||||| | | ||| |||| |||| |||| |||||||| Sbjct 48258 GGTCCACGCCCTGGCCGGTGTAGTCCG-CGTGCATGTCCTTGTACTTGGCGCCAAAGTGG 48200 Query 147295 CTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGA--GAAGCCCG 147352 | ||||||||||||||| || || || || ||||| | | | |||| | ||||| Sbjct 48199 CGCCACTGGAAGCCGTATACCGGTCCAAGATCGCC---CACTTCGCGCGACTGCAGCCCT 48143 Query 147353 CCCG-CTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCA-CTCCCTTGGCGGA 147410 | | | ||| |||| | || || | | ||||||| ||| | ||| | || | Sbjct 48142 CGAGTGTCCAGATACTCCCGAGATCCATTGCCGTCCCAAATGTGGATGTCCTTCTGCTG- 48084 Query 147411 GAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCT 147470 ||| | | | |||| ||| | ||||||||| ||||||||||| || || | Sbjct 48083 CAGCGTGTGGGCGCTCGTGTCGCCGCTGATGAACCACAGCAGCTCCTCGGCCACACCGCG 48024 Query 147471 CCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGTCCCTCAGCGAATACCTCGC 147527 ||| |||||||||||||| ||||||| |||||| | |||||| || ||| | Sbjct 48023 CCAGAAGACCCTCTTGGTCGTCAGCARCGGGAACACGTTGTCCCTGAGACTGAACCGCAT 47964 Query 147528 CTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTC 147569 ||| | || || | ||||||||||| ||||| || | ||| Sbjct 47963 CTGCGCGCCGAAGATCGACAGCGTGCCTGTGCCTGTSCGGTC 47922 >seq27802 Length=835 Score = 82.4 bits (90), Expect = 9e-11 Identities = 103/141 (73%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 147426 CGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTT 147485 |||| |||| | ||||||||| ||||||||||| || || | ||| ||||||||||| Sbjct 493 CGTGTAGCCGCTGATGAACCACAGCAGCTCCTCGGCCACACCGCGCCAGAAGACCCTCTT 434 Query 147486 GGTGGTCAGCAGGGGGAAC---TGGTCCCTCAGCGAATACCTCGCCTGGTCCCCAAACAC 147542 ||| ||||||| |||||| | |||||| || ||| | ||| | || || | Sbjct 433 GGTCGTCAGCAACGGGAACACGTTGTCCCTGAGACTGAACCGCATCTGCGCGCCGAAGAT 374 Query 147543 AGACAGCGTGCCCGTGCCCGT 147563 |||||||||| ||||| || Sbjct 373 CAACAGCGTGCCTGTGCCTGT 353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583218661939200