Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq36271 131 5e-25 >seq36271 Length=16985 Score = 131 bits (144), Expect = 5e-25 Identities = 366/550 (67%), Gaps = 14/550 (3%) Strand=Plus/Minus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 |||||| || || ||| | |||||||| ||| || ||| || ||||| || || || || Sbjct 2549 CGGCATCATCCCCATGCTGCGTGTGTTTAACGACACGGCACGATACGTGGACCAGGGCGG 2490 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACG 255090 |||||| ||| ||| ||||| |||||||||||||||| |||||||||||| || || Sbjct 2489 CGGCAAGCGCAAGGGATCGTTCGCCATCTACCTGGAGCCCTGGCACGCCGAC-GTGTTCG 2431 Query 255091 -GTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACA 255149 ||| | ||| | || ||||| |||| || ||| |||||| | | | Sbjct 2430 AGTTCCTGGACCTGCGGAAGAACCACGGCAACGAGCTGCACCGCGCGCGCGACCTGTTCT 2371 Query 255150 CCGCTGTCT-GGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGC 255208 ||| ||| ||||| | ||||| || ||| ||||| ||| ||||| |||||| Sbjct 2370 ACGCGCTCTGGGTGCCG-GATCTCTTCATGAAGCGCGTCGAAGCAGACGGCCAGTGGAGC 2312 Query 255209 CTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAA 255268 ||| | || |||||| ||||||| || ||| | ||||| |||||||| || Sbjct 2311 CTCTTCTGCCCCAACGAGGCGCCCGGGCTCTACGAGTGCTGGGGCGACGAGTTCGAGGCC 2252 Query 255269 CTGTATCTGGAGTACGAGCGTGCCGGCCG-GTTCGTACGCCAAGTGCCCGCGAAGAAGAT 255327 ||||| |||||||| | || || | ||| | | | | | ||| || || | Sbjct 2251 CTGTACGAAAAGTACGAGAAGGAGGGACGCGCTCGCAAGACGA-TCAAAGCGCAGCAGCT 2193 Query 255328 CTGGAACACGATGGTGCGCATGCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAAAGA 255387 ||| | | || || | ||| | || || || |||||||| | || ||| || Sbjct 2192 GTGGTTCTCCATCCTGGACGCCCAGATTGAGACGGGCGTGCCGTTCATGCTGTTCAAGGA 2133 Query 255388 C-CACATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCG---AACC 255443 | | || |||| ||||||||| | ||| || ||||| | ||||| ||| Sbjct 2132 CTCGGCCAACCGCA-AGTCGAACCAGCAGAACCTGGGCACGAT---CCGCTCGAGCAACT 2077 Query 255444 TGTGCACCGAGATTACGTTGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAACTTGGCGT 255503 ||||| ||| | | | | || |||| | | ||||||||||| |||||| |||||| Sbjct 2076 TGTGCTGTGAGGTCATGGAGTACTCGTCGCCTGACGAGGTGGCCGTGTGCAACCTGGCGT 2017 Query 255504 CCATCTCGCT 255513 || | |||| Sbjct 2016 CCGTGGCGCT 2007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587584494704960