Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq36271 161 1e-34 seq32329 105 8e-18 seq27878 105 8e-18 seq27877 105 8e-18 seq26115 105 8e-18 >seq36271 Length=16985 Score = 161 bits (178), Expect = 1e-34 Identities = 430/646 (67%), Gaps = 11/646 (2%) Strand=Plus/Plus Query 111446 GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TC 111504 || ||||||||| |||||||||| ||| ||||| || ||||| || ||| | || || Sbjct 2220 GCGCGTCCCTCCTTCTCGTACTTTTCGTACAGGGCCTCGAACTCGTCGCCC-CAGCACTC 2278 Query 111505 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCG 111564 | |||| || || |||| || || ||||| || ||| || || || | || || || Sbjct 2279 GTAGAGCCCGGGCGCCTCGTTGGGGCAGAAGAGGCTCCACTGGCCGTCTGCTTCGACGCG 2338 Query 111565 CTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTT 111623 ||||||||| || || || | ||| || | | || || || | | | | || | | Sbjct 2339 CTTCATGAAGAGATCCGGCACCCAGAGCGCGTAGAACAGGTCGCGCGCGCGGTGCAGC-T 2397 Query 111624 CGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAA 111683 ||| || ||||| || | || |||||||| | | || |||||||| ||||| | Sbjct 2398 CGTTGCCGTGGTTCTTCCGCAGGTCCAGGAACTCGAACACGTCGGCGTGCCAGGGCTCCA 2457 Query 111684 GATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGG 111740 | |||| |||| |||||||| || | || | || | || || || || ||| Sbjct 2458 GGTAGATGGCGAACGATCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTATCGTGCCGTGT 2517 Query 111741 CGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATAC 111800 ||||||| || || ||||| || || || || | || ||||| || || ||||| Sbjct 2518 CGTTAAACACACGCAGCATGGGGATGATGCCGTTGGAGGAGCCATTCGTGCCGCGAAT-G 2576 Query 111801 GAGAT-TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAG 111859 || | || | || | | || || || || ||||| || || |||||||| ||| Sbjct 2577 TAGCTGTTCGTCGCACGGATATTGTGCATACTGATGCCAATCCCGCCCGCCCACTTGGAG 2636 Query 111860 ATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCG 111919 || |||||||| | | || || | || || || | || ||||| |||| |||| Sbjct 2637 ATACACGCACACTGCTTCAGTGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATGGCC 2696 Query 111920 ATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTT 111979 | |||||||| || | ||| || | || || || || ||||| || || || || Sbjct 2697 AGGAGGAAGCAGGACGAGAGCTGAGGACGCGGCGTGCCGGCGTTGAACAGCGTGGGCGTC 2756 Query 111980 GCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTC 112038 ||||| |||| | || | || ||||| ||||| |||| || | | |||| ||| Sbjct 2757 GCGTGCGTGAA-AAACATCTGCGACATGAGCTCGTACGTCTGCAGAGCGGCCTCAACGTC 2815 Query 112039 TTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 | ||||||||| | || || ||||||| ||| | ||| ||| Sbjct 2816 CGTCTTGTGGATGCCCAGCGCCACGCGCATGATCATCTGCTGCGGG 2861 >seq32329 Length=12294 Score = 105 bits (116), Expect = 8e-18 Identities = 297/448 (66%), Gaps = 16/448 (4%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| ||||| |||||||| || | || || | ||||| Sbjct 11728 TACTCGCCCACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 11669 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 122489 |||| || || ||||| |||| | || | ||| |||||| || || ||||| Sbjct 11668 CAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACGCCCAACGAGTAC-AGCAGACG 11610 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 |||| |||| |||| ||||||| | |||| | |||||||| ||||| || | Sbjct 11609 GTCCGCCACAAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATCAGCTCCAC 11550 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 || || | ||| | | |||| | | ||| ||| | ||||| || ||| || ||| Sbjct 11549 CGGCAGCGAGTCGCACACGAACTCGTGCTCGATCACCACCGCGTCACGCACAATCTGGTG 11490 Query 122610 GATAG---TTTC-GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---GCAA 122662 | | || || || || | || || |||| || | || | || | Sbjct 11489 CACGCGGCTCTCAGGCAGCTTGT---TCACC---AG-CTTGGAGTACAGCAGGCACGCGA 11437 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | ||| ||| | ||||| || ||| || || || || ||||||| ||||| |||| Sbjct 11436 AGTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCA 11377 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 | || || |||||||||| ||| | || | |||||| || || ||||||||||| |||| Sbjct 11376 TCAGCCCGCGCTTCTTCAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATGCCCT 11317 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTC 122810 ||||| || ||||| | ||||| || Sbjct 11316 CCACAGCGGCGAACGCCAGCAGGCGCTC 11289 >seq27878 Length=10574 Score = 105 bits (116), Expect = 8e-18 Identities = 297/448 (66%), Gaps = 16/448 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| ||||| |||||||| || | || || | ||||| Sbjct 567 TACTCGCCCACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 626 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 122489 |||| || || ||||| |||| | || | ||| |||||| || || ||||| Sbjct 627 CAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACGCCCAACGAGTAC-AGCAGACG 685 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 |||| |||| |||| ||||||| | |||| | |||||||| ||||| || | Sbjct 686 GTCCGCCACAAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATCAGCTCCAC 745 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 || || | ||| | | |||| | | ||| ||| | ||||| || ||| || ||| Sbjct 746 CGGCAGCGAGTCGCACACGAACTCGTGCTCGATCACCACCGCGTCACGCACAATCTGGTG 805 Query 122610 GATAG---TTTC-GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---GCAA 122662 | | || || || || | || || |||| || | || | || | Sbjct 806 CACGCGGCTCTCAGGCAGCTTGT---TCACC---AG-CTTGGAGTACAGCAGGCACGCGA 858 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | ||| ||| | ||||| || ||| || || || || ||||||| ||||| |||| Sbjct 859 AGTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCA 918 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 | || || |||||||||| ||| | || | |||||| || || ||||||||||| |||| Sbjct 919 TCAGCCCGCGCTTCTTCAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATGCCCT 978 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTC 122810 ||||| || ||||| | ||||| || Sbjct 979 CCACAGCGGCGAACGCCAGCAGGCGCTC 1006 >seq27877 Length=1900 Score = 105 bits (116), Expect = 8e-18 Identities = 297/448 (66%), Gaps = 16/448 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| ||||| |||||||| || | || || | ||||| Sbjct 567 TACTCGCCCACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 626 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 122489 |||| || || ||||| |||| | || | ||| |||||| || || ||||| Sbjct 627 CAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACGCCCAACGAGTAC-AGCAGACG 685 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 |||| |||| |||| ||||||| | |||| | |||||||| ||||| || | Sbjct 686 GTCCGCCACAAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATCAGCTCCAC 745 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 || || | ||| | | |||| | | ||| ||| | ||||| || ||| || ||| Sbjct 746 CGGCAGCGAGTCGCACACGAACTCGTGCTCGATCACCACCGCGTCACGCACAATCTGGTG 805 Query 122610 GATAG---TTTC-GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---GCAA 122662 | | || || || || | || || |||| || | || | || | Sbjct 806 CACGCGGCTCTCAGGCAGCTTGT---TCACC---AG-CTTGGAGTACAGCAGGCACGCGA 858 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | ||| ||| | ||||| || ||| || || || || ||||||| ||||| |||| Sbjct 859 AGTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCA 918 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 | || || |||||||||| ||| | || | |||||| || || ||||||||||| |||| Sbjct 919 TCAGCCCGCGCTTCTTCAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATGCCCT 978 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTC 122810 ||||| || ||||| | ||||| || Sbjct 979 CCACAGCGGCGAACGCCAGCAGGCGCTC 1006 >seq26115 Length=10575 Score = 105 bits (116), Expect = 8e-18 Identities = 297/448 (66%), Gaps = 16/448 (4%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| ||||| |||||||| || | || || | ||||| Sbjct 10009 TACTCGCCCACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 9950 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 122489 |||| || || ||||| |||| | || | ||| |||||| || || ||||| Sbjct 9949 CAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACGCCCAACGAGTAC-AGCAGACG 9891 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 |||| |||| |||| ||||||| | |||| | |||||||| ||||| || | Sbjct 9890 GTCCGCCACAAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATCAGCTCCAC 9831 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 || || | ||| | | |||| | | ||| ||| | ||||| || ||| || ||| Sbjct 9830 CGGCAGCGAGTCGCACACGAACTCGTGCTCGATCACCACCGCGTCACGCACAATCTGGTG 9771 Query 122610 GATAG---TTTC-GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---GCAA 122662 | | || || || || | || || |||| || | || | || | Sbjct 9770 CACGCGGCTCTCAGGCAGCTTGT---TCACC---AG-CTTGGAGTACAGCAGGCACGCGA 9718 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | ||| ||| | ||||| || ||| || || || || ||||||| ||||| |||| Sbjct 9717 AGTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGAAGCTCAGACCGGGCA 9658 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 | || || |||||||||| ||| | || | |||||| || || ||||||||||| |||| Sbjct 9657 TCAGCCCGCGCTTCTTCAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATGCCCT 9598 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTC 122810 ||||| || ||||| | ||||| || Sbjct 9597 CCACAGCGGCGAACGCCAGCAGGCGCTC 9570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627742100428800