Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq36271 183 4e-41 seq32329 102 1e-16 seq27878 102 1e-16 seq27877 102 1e-16 seq26115 102 1e-16 seq22780 98.7 1e-15 seq17832 98.7 1e-15 seq36549 93.3 5e-14 >seq36271 Length=16985 Score = 183 bits (202), Expect = 4e-41 Identities = 437/647 (68%), Gaps = 13/647 (2%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| | ||| ||||||||||||| | || || || | ||| |||| | | Sbjct 2861 CCCGCAGCAGATGATCATGCGCGTGGCGCTGGGCATCCACAAGACGGACGTTGAGGCCGC 2802 Query 104281 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 104339 || |||| ||||| ||||| || | || | |||| ||||| || || || || | Sbjct 2801 TCTGCAGACGTACGAGCTCATGTCGCAGATGTTT-TTCACGCACGCGACGCCCACGCTGT 2743 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || || || || | || || | || |||||||| | |||| |||| | Sbjct 2742 TCAACGCCGGCACGCCGCGTCCTCAGCTCTCGTCCTGCTTCCTCCTGGCCATGCAGGACG 2683 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 |||| || | || || || | || || | | |||||||| ||||| |||||||| | Sbjct 2682 ACTCGATTGAGGGCATTTACGACACACTGAAGCAGTGTGCGTGTATCTCCAAGTGGGCGG 2623 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACA 104518 | || ||||| || || || || | | || | || | || ||||| || || Sbjct 2622 GCGGGATTGGCATCAGTATGCACAATATCCGTGCGACGAACAGCTAC-ATTCGCGGCACG 2564 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 ||||| || | || || || || ||||| || || ||||||| ||| || || || Sbjct 2563 AATGGCTCCTCCAACGGCATCATCCCCATGCTGCGTGTGTTTAACGACACGGCACGATAC 2504 Query 104579 GTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 || | || | || | || |||||||| |||| |||| || ||||| |||||| Sbjct 2503 GTGGACCAGGGCGGCGGCAAGCGCAAGGGATCGTTCGCCATCTACCTGGAGCCCTGGCAC 2444 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695 || || | | |||||||| || |||| ||||| || ||||| | | | | || Sbjct 2443 GCCGACGTGTTCGAGTTCCTGGACCTGCGGAAGAACCACGGCAACGAGCTG-CACCGCGC 2385 Query 104696 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG-AGGAGA 104753 ||||| || |||| ||| |||||| | || ||||||||||||||| | || | || ||| Sbjct 2384 GCGCGACCTGTTCTACGCGCTCTGGGTGCCGGATCTCTTCATGAAGCGCGTCGAAGCAGA 2325 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGT 104812 ||| | ||| ||||| || || || |||| || || |||| ||| ||| | ||| Sbjct 2324 -CGGCCAGTGGAGCCTCTTCTGCCCCAACGAGGCGCCCGGGCTCTACGAGTGCTG-GGGC 2267 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGC 104859 || ||||| || ||||| ||| |||||||||| | || || || || Sbjct 2266 GACGAGTTCGAGGCCCTGTACGAAAAGTACGAGAAGGAGGGACGCGC 2220 >seq32329 Length=12294 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 ||||| || | || || || ||| ||||| ||||||||||| || || |||||| | Sbjct 11289 GAGCGCCTGCTGGCGTTCGCCGCTGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCG 11348 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 || | ||||| |||||||| || || ||||| ||||| ||||||| |||||||| ||| Sbjct 11349 ATCTTCTGGCTGAAGAAGCGCGGGCTGATGCCCGGTCTGAGCTTCTCGAACGAGCTCATC 11408 Query 94924 TCTCGTGACGAGGG 94937 ||||||||||| Sbjct 11409 AGCCGTGACGAGGG 11422 >seq27878 Length=10574 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 ||||| || | || || || ||| ||||| ||||||||||| || || |||||| | Sbjct 1006 GAGCGCCTGCTGGCGTTCGCCGCTGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCG 947 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 || | ||||| |||||||| || || ||||| ||||| ||||||| |||||||| ||| Sbjct 946 ATCTTCTGGCTGAAGAAGCGCGGGCTGATGCCCGGTCTGAGCTTCTCGAACGAGCTCATC 887 Query 94924 TCTCGTGACGAGGG 94937 ||||||||||| Sbjct 886 AGCCGTGACGAGGG 873 >seq27877 Length=1900 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 ||||| || | || || || ||| ||||| ||||||||||| || || |||||| | Sbjct 1006 GAGCGCCTGCTGGCGTTCGCCGCTGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCG 947 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 || | ||||| |||||||| || || ||||| ||||| ||||||| |||||||| ||| Sbjct 946 ATCTTCTGGCTGAAGAAGCGCGGGCTGATGCCCGGTCTGAGCTTCTCGAACGAGCTCATC 887 Query 94924 TCTCGTGACGAGGG 94937 ||||||||||| Sbjct 886 AGCCGTGACGAGGG 873 >seq26115 Length=10575 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 ||||| || | || || || ||| ||||| ||||||||||| || || |||||| | Sbjct 9570 GAGCGCCTGCTGGCGTTCGCCGCTGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCG 9629 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 || | ||||| |||||||| || || ||||| ||||| ||||||| |||||||| ||| Sbjct 9630 ATCTTCTGGCTGAAGAAGCGCGGGCTGATGCCCGGTCTGAGCTTCTCGAACGAGCTCATC 9689 Query 94924 TCTCGTGACGAGGG 94937 ||||||||||| Sbjct 9690 AGCCGTGACGAGGG 9703 >seq22780 Length=3860 Score = 98.7 bits (108), Expect = 1e-15 Identities = 253/379 (67%), Gaps = 16/379 (4%) Strand=Plus/Minus Query 169139 GGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCG 169198 |||||||||| ||| |||| ||||| | |||||||||||||| || |||| ||| Sbjct 1078 GGCCAGAAGTGGTGGATCAAATTGATCACCAGACCCTTGATGTGACTGCCATCGTGATCC 1019 Query 169199 GCATCCGTCATGATCATGAGACGACCATACCGAAG---CTCGGAAACATCTTGATAGTCC 169255 ||| | ||||||||| || | ||||| || || || || | || | ||| Sbjct 1018 TGATCTGCCATGATCATAAGGTGGCCATAACGCAGGCCCTTGGTAGACTCGT---AGTTT 962 Query 169256 TTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTT---GAACTCTTGGTTTGATGTG 169312 | || | | || ||||||| |||||| |||| || ||||| ||| | Sbjct 961 TGGCCGTACTTGAG-CCCAAGAA--TCTTGACCACGTTCTGGATCTCTTCGTTCTTCACG 905 Query 169313 AGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCG 169372 | ||| | | || || ||||| ||| ||| ||||| | || ||||| ||| Sbjct 904 ATCTGCGAGTGGCTCGCTTCACGAACGTTCAGCATCTTACCACGCAAGGGAAAGACGCCG 845 Query 169373 TAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCC 169432 || | || | ||||| || | ||||| | || |||| ||||| |||||||| || Sbjct 844 TAATAGTCTCTGCCAACAACAGCAAGACCGCCCACCGCGACCGTCTTGGCCGAGTCTCCT 785 Query 169433 TCGGTGACGATGAGCGTACATT--TTCCAGATTGTGCCGTACCCGCCTTGTTCGCATCAT 169490 || |||| ||| | ||| || | || | ||| ||||||| || | ||||||||||| Sbjct 784 TCTGTGAGGATCAACGTGCAGTCCTTGCCCTTTG--CCGTACCAGCGTGGTTCGCATCAT 727 Query 169491 CCAATTTGGGAATACCAGT 169509 ||| || |||||||| || Sbjct 726 CCAGCTTCGGAATACCCGT 708 >seq17832 Length=15358 Score = 98.7 bits (108), Expect = 1e-15 Identities = 253/379 (67%), Gaps = 16/379 (4%) Strand=Plus/Plus Query 169139 GGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCG 169198 |||||||||| ||| |||| ||||| | |||||||||||||| || |||| ||| Sbjct 14405 GGCCAGAAGTGGTGGATCAAATTGATCACCAGACCCTTGATGTGACTGCCATCGTGATCC 14464 Query 169199 GCATCCGTCATGATCATGAGACGACCATACCGAAG---CTCGGAAACATCTTGATAGTCC 169255 ||| | ||||||||| || | ||||| || || || || | || | ||| Sbjct 14465 TGATCTGCCATGATCATAAGGTGGCCATAACGCAGGCCCTTGGTAGACTCGT---AGTTT 14521 Query 169256 TTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTT---GAACTCTTGGTTTGATGTG 169312 | || | | || ||||||| |||||| |||| || ||||| ||| | Sbjct 14522 TGGCCGTACTTGAG-CCCAAGAA--TCTTGACCACGTTCTGGATCTCTTCGTTCTTCACG 14578 Query 169313 AGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCG 169372 | ||| | | || || ||||| ||| ||| ||||| | || ||||| ||| Sbjct 14579 ATCTGCGAGTGGCTCGCTTCACGAACGTTCAGCATCTTACCACGCAAGGGAAAGACGCCG 14638 Query 169373 TAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCC 169432 || | || | ||||| || | ||||| | || |||| ||||| |||||||| || Sbjct 14639 TAATAGTCTCTGCCAACAACAGCAAGACCGCCCACCGCGACCGTCTTGGCCGAGTCTCCT 14698 Query 169433 TCGGTGACGATGAGCGTACATT--TTCCAGATTGTGCCGTACCCGCCTTGTTCGCATCAT 169490 || |||| ||| | ||| || | || | ||| ||||||| || | ||||||||||| Sbjct 14699 TCTGTGAGGATCAACGTGCAGTCCTTGCCCTTTG--CCGTACCAGCGTGGTTCGCATCAT 14756 Query 169491 CCAATTTGGGAATACCAGT 169509 ||| || |||||||| || Sbjct 14757 CCAGCTTCGGAATACCCGT 14775 >seq36549 Length=11370 Score = 93.3 bits (102), Expect = 5e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 9699 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA- 9757 |||| ||||| |||||||| ||||| |||||||| || | |||||| ||| || | Sbjct 4145 CCACAGCATCGATCTCATCGATGAACACGATGCACGG--GGCGTTCGCGCGCGCCTCCTT 4202 Query 9758 -AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 9816 || || || || |||||| | |||||||| || |||||||| | |||| | | | Sbjct 4203 GAACAGGTCACGCACACGCGACGGACCCACACCGACGAACATCTCGATGAAGTCCGAGCC 4262 Query 9817 GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9876 ||| || ||| || ||| | | ||||| || |||| ||| || || ||||| Sbjct 4263 AGAAATGCTGAAGAACGGCACACTCGCCTCACCAGCCGTGGCCTTGGCCAGCAGCGTCTT 4322 Query 9877 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 9928 ||||||||| ||| || | || || || || || |||||||||||| Sbjct 4323 ACCCGTACCGGGCGGGCCGACAAGCAGCGCGCCCTTGGGGATCTTGGCGCCA 4374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582991566814720